| Literature DB >> 25797438 |
K Świderek1, I Tuñón2, V Moliner3, J Bertran4.
Abstract
In this contribution, recent developments in the design of biocatalysts are reviewed with particular emphasis in the de novo strategy. Studies based on three different reactions, Kemp elimination, Diels-Alder and Retro-Aldolase, are used to illustrate different success achieved during the last years. Finally, a section is devoted to the particular case of designed metalloenzymes. As a general conclusion, the interplay between new and more sophisticated engineering protocols and computational methods, based on molecular dynamics simulations with Quantum Mechanics/Molecular Mechanics potentials and fully flexible models, seems to constitute the bed rock for present and future successful design strategies.Entities:
Keywords: De novo design; Diels–Alder; Kemp elimination; Molecular dynamics; Protein design; QM/MM; Retro-Aldolase
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Year: 2015 PMID: 25797438 PMCID: PMC4554825 DOI: 10.1016/j.abb.2015.03.013
Source DB: PubMed Journal: Arch Biochem Biophys ISSN: 0003-9861 Impact factor: 4.013