Literature DB >> 24505800

Diffusion propagator estimation from sparse measurements in a tractography framework.

Yogesh Rathi1, Borjan Gagoski1, Kawin Setsompop1, Oleg Michailovich2, P Ellen Grant1, Carl-Fredrik Westin1.   

Abstract

Estimation of the diffusion propagator from a sparse set of diffusion MRI (dMRI) measurements is a field of active research. Sparse reconstruction methods propose to reduce scan time and are particularly suitable for scanning un-coperative patients. Recent work on reconstructing the diffusion signal from very few measurements using compressed sensing based techniques has focussed on propagator (or signal) estimation at each voxel independently. However, the goal of many neuroscience studies is to use tractography to study the pathology in white matter fiber tracts. Thus, in this work, we propose a joint framework for robust estimation of the diffusion propagator from sparse measurements while simultaneously tracing the white matter tracts. We propose to use a novel multi-tensor model of diffusion which incorporates the biexponential radial decay of the signal. Our preliminary results on in-vivo data show that the proposed method produces consistent and reliable fiber tracts from very few gradient directions while simultaneously estimating the bi-exponential decay of the diffusion propagator.

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Mesh:

Year:  2013        PMID: 24505800      PMCID: PMC4103161          DOI: 10.1007/978-3-642-40760-4_64

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  18 in total

1.  Biexponential apparent diffusion coefficient parametrization in adult vs newborn brain.

Authors:  R V Mulkern; S Vajapeyam; R L Robertson; P A Caruso; M J Rivkin; S E Maier
Journal:  Magn Reson Imaging       Date:  2001-06       Impact factor: 2.546

2.  A global optimisation method for robust affine registration of brain images.

Authors:  M Jenkinson; S Smith
Journal:  Med Image Anal       Date:  2001-06       Impact factor: 8.545

3.  New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter.

Authors:  Yaniv Assaf; Raisa Z Freidlin; Gustavo K Rohde; Peter J Basser
Journal:  Magn Reson Med       Date:  2004-11       Impact factor: 4.668

4.  Hybrid diffusion imaging.

Authors:  Yu-Chien Wu; Andrew L Alexander
Journal:  Neuroimage       Date:  2007-03-24       Impact factor: 6.556

5.  FAST DISPLACEMENT PROBABILITY PROFILE APPROXIMATION FROM HARDI USING 4TH-ORDER TENSORS.

Authors:  Angelos Barmpoutis; Baba C Vemuri; John R Forder
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2008-05-14

6.  Sparse DSI: learning DSI structure for denoising and fast imaging.

Authors:  Alexandre Gramfort; Cyril Poupon; Maxime Descoteaux
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

7.  Diffusional kurtosis imaging: the quantification of non-gaussian water diffusion by means of magnetic resonance imaging.

Authors:  Jens H Jensen; Joseph A Helpern; Anita Ramani; Hanzhang Lu; Kyle Kaczynski
Journal:  Magn Reson Med       Date:  2005-06       Impact factor: 4.668

8.  Spatially regularized compressed sensing for high angular resolution diffusion imaging.

Authors:  Oleg Michailovich; Yogesh Rathi; Sudipto Dolui
Journal:  IEEE Trans Med Imaging       Date:  2011-05       Impact factor: 10.048

9.  The SRI24 multichannel atlas of normal adult human brain structure.

Authors:  Torsten Rohlfing; Natalie M Zahr; Edith V Sullivan; Adolf Pfefferbaum
Journal:  Hum Brain Mapp       Date:  2010-05       Impact factor: 5.038

10.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

Authors:  T E J Behrens; H Johansen Berg; S Jbabdi; M F S Rushworth; M W Woolrich
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

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  10 in total

Review 1.  A review of neuroimaging findings in repetitive brain trauma.

Authors:  Inga K Koerte; Alexander P Lin; Anna Willems; Marc Muehlmann; Jakob Hufschmidt; Michael J Coleman; Isobel Green; Huijun Liao; David F Tate; Elisabeth A Wilde; Ofer Pasternak; Sylvain Bouix; Yogesh Rathi; Erin D Bigler; Robert A Stern; Martha E Shenton
Journal:  Brain Pathol       Date:  2015-05       Impact factor: 6.508

2.  Variability and anatomical specificity of the orbitofrontothalamic fibers of passage in the ventral capsule/ventral striatum (VC/VS): precision care for patient-specific tractography-guided targeting of deep brain stimulation (DBS) in obsessive compulsive disorder (OCD).

Authors:  Nikolaos Makris; Yogesh Rathi; Palig Mouradian; Giorgio Bonmassar; George Papadimitriou; Wingkwai I Ing; Edward H Yeterian; Marek Kubicki; Emad N Eskandar; Lawrence L Wald; Qiuyun Fan; Aapo Nummenmaa; Alik S Widge; Darin D Dougherty
Journal:  Brain Imaging Behav       Date:  2016-12       Impact factor: 3.978

3.  Joint RElaxation-Diffusion Imaging Moments to Probe Neurite Microstructure.

Authors:  Lipeng Ning; Borjan Gagoski; Filip Szczepankiewicz; Carl-Fredrik Westin; Yogesh Rathi
Journal:  IEEE Trans Med Imaging       Date:  2019-08-08       Impact factor: 10.048

4.  A Compressed-Sensing Approach for Super-Resolution Reconstruction of Diffusion MRI.

Authors:  Lipeng Ning; Kawin Setsompop; Oleg Michailovich; Nikos Makris; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Inf Process Med Imaging       Date:  2015

5.  Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis.

Authors:  Fan Zhang; Weining Wu; Lipeng Ning; Gloria McAnulty; Deborah Waber; Borjan Gagoski; Kiera Sarill; Hesham M Hamoda; Yang Song; Weidong Cai; Yogesh Rathi; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-01-11       Impact factor: 6.556

6.  A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging.

Authors:  Lipeng Ning; Kawin Setsompop; Oleg Michailovich; Nikos Makris; Martha E Shenton; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Neuroimage       Date:  2015-10-23       Impact factor: 6.556

7.  Quantifying Genetic and Environmental Influence on Gray Matter Microstructure Using Diffusion MRI.

Authors:  Madhura Baxi; Maria A Di Biase; Amanda E Lyall; Suheyla Cetin-Karayumak; Johanna Seitz; Lipeng Ning; Nikos Makris; Douglas Rosene; Marek Kubicki; Yogesh Rathi
Journal:  Cereb Cortex       Date:  2020-11-03       Impact factor: 5.357

8.  Retrospective harmonization of multi-site diffusion MRI data acquired with different acquisition parameters.

Authors:  Suheyla Cetin Karayumak; Sylvain Bouix; Lipeng Ning; Anthony James; Tim Crow; Martha Shenton; Marek Kubicki; Yogesh Rathi
Journal:  Neuroimage       Date:  2018-09-08       Impact factor: 7.400

9.  Performance of unscented Kalman filter tractography in edema: Analysis of the two-tensor model.

Authors:  Ruizhi Liao; Lipeng Ning; Zhenrui Chen; Laura Rigolo; Shun Gong; Ofer Pasternak; Alexandra J Golby; Yogesh Rathi; Lauren J O'Donnell
Journal:  Neuroimage Clin       Date:  2017-06-26       Impact factor: 4.881

Review 10.  The sensitivity of diffusion MRI to microstructural properties and experimental factors.

Authors:  Maryam Afzali; Tomasz Pieciak; Sharlene Newman; Eleftherios Garyfallidis; Evren Özarslan; Hu Cheng; Derek K Jones
Journal:  J Neurosci Methods       Date:  2020-10-02       Impact factor: 2.390

  10 in total

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