Literature DB >> 26505296

A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging.

Lipeng Ning1, Kawin Setsompop2, Oleg Michailovich3, Nikos Makris2, Martha E Shenton4, Carl-Fredrik Westin4, Yogesh Rathi4.   

Abstract

Diffusion MRI (dMRI) can provide invaluable information about the structure of different tissue types in the brain. Standard dMRI acquisitions facilitate a proper analysis (e.g. tracing) of medium-to-large white matter bundles. However, smaller fiber bundles connecting very small cortical or sub-cortical regions cannot be traced accurately in images with large voxel sizes. Yet, the ability to trace such fiber bundles is critical for several applications such as deep brain stimulation and neurosurgery. In this work, we propose a novel acquisition and reconstruction scheme for obtaining high spatial resolution dMRI images using multiple low resolution (LR) images, which is effective in reducing acquisition time while improving the signal-to-noise ratio (SNR). The proposed method called compressed-sensing super resolution reconstruction (CS-SRR), uses multiple overlapping thick-slice dMRI volumes that are under-sampled in q-space to reconstruct diffusion signal with complex orientations. The proposed method combines the twin concepts of compressed sensing and super-resolution to model the diffusion signal (at a given b-value) in a basis of spherical ridgelets with total-variation (TV) regularization to account for signal correlation in neighboring voxels. A computationally efficient algorithm based on the alternating direction method of multipliers (ADMM) is introduced for solving the CS-SRR problem. The performance of the proposed method is quantitatively evaluated on several in-vivo human data sets including a true SRR scenario. Our experimental results demonstrate that the proposed method can be used for reconstructing sub-millimeter super resolution dMRI data with very good data fidelity in clinically feasible acquisition time.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Compressed sensing; Diffusion MRI; Spherical ridgelets; Super resolution reconstruction

Mesh:

Year:  2015        PMID: 26505296      PMCID: PMC4691422          DOI: 10.1016/j.neuroimage.2015.10.061

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  41 in total

1.  Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions.

Authors:  Benoit Scherrer; Ali Gholipour; Simon K Warfield
Journal:  Med Image Anal       Date:  2012-06-19       Impact factor: 8.545

2.  Collaborative patch-based super-resolution for diffusion-weighted images.

Authors:  Pierrick Coupé; José V Manjón; Maxime Chamberland; Maxime Descoteaux; Bassem Hiba
Journal:  Neuroimage       Date:  2013-06-19       Impact factor: 6.556

3.  How and how not to correct for CSF-contamination in diffusion MRI.

Authors:  Claudia Metzler-Baddeley; Michael J O'Sullivan; Sonya Bells; Ofer Pasternak; Derek K Jones
Journal:  Neuroimage       Date:  2011-09-05       Impact factor: 6.556

4.  On describing human white matter anatomy: the white matter query language.

Authors:  Demian Wassermann; Nikos Makris; Yogesh Rathi; Martha Shenton; Ron Kikinis; Marek Kubicki; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

Review 5.  A review of magnetic resonance imaging and diffusion tensor imaging findings in mild traumatic brain injury.

Authors:  M E Shenton; H M Hamoda; J S Schneiderman; S Bouix; O Pasternak; Y Rathi; M-A Vu; M P Purohit; K Helmer; I Koerte; A P Lin; C-F Westin; R Kikinis; M Kubicki; R A Stern; R Zafonte
Journal:  Brain Imaging Behav       Date:  2012-06       Impact factor: 3.978

6.  k-space and q-space: combining ultra-high spatial and angular resolution in diffusion imaging using ZOOPPA at 7 T.

Authors:  Robin M Heidemann; Alfred Anwander; Thorsten Feiweier; Thomas R Knösche; Robert Turner
Journal:  Neuroimage       Date:  2012-01-09       Impact factor: 6.556

Review 7.  Ultra-fast MRI of the human brain with simultaneous multi-slice imaging.

Authors:  David A Feinberg; Kawin Setsompop
Journal:  J Magn Reson       Date:  2013-02-13       Impact factor: 2.229

8.  Bessel Fourier Orientation Reconstruction (BFOR): an analytical diffusion propagator reconstruction for hybrid diffusion imaging and computation of q-space indices.

Authors:  A Pasha Hosseinbor; Moo K Chung; Yu-Chien Wu; Andrew L Alexander
Journal:  Neuroimage       Date:  2012-08-31       Impact factor: 6.556

Review 9.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

10.  Continuous diffusion signal, EAP and ODF estimation via Compressive Sensing in diffusion MRI.

Authors:  Sylvain L Merlet; Rachid Deriche
Journal:  Med Image Anal       Date:  2013-03-20       Impact factor: 8.545

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  17 in total

1.  Multifold Acceleration of Diffusion MRI via Deep Learning Reconstruction from Slice-Undersampled Data.

Authors:  Yoonmi Hong; Geng Chen; Pew-Thian Yap; Dinggang Shen
Journal:  Inf Process Med Imaging       Date:  2019-05-22

2.  Fast submillimeter diffusion MRI using gSlider-SMS and SNR-enhancing joint reconstruction.

Authors:  Justin P Haldar; Yunsong Liu; Congyu Liao; Qiuyun Fan; Kawin Setsompop
Journal:  Magn Reson Med       Date:  2020-01-10       Impact factor: 4.668

3.  Accelerated radial diffusion spectrum imaging using a multi-echo stimulated echo diffusion sequence.

Authors:  Steven H Baete; Fernando E Boada
Journal:  Magn Reson Med       Date:  2017-03-31       Impact factor: 4.668

4.  XQ-SR: Joint x-q space super-resolution with application to infant diffusion MRI.

Authors:  Geng Chen; Bin Dong; Yong Zhang; Weili Lin; Dinggang Shen; Pew-Thian Yap
Journal:  Med Image Anal       Date:  2019-06-22       Impact factor: 8.545

5.  A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans.

Authors:  Yuanyuan Jia; Ali Gholipour; Zhongshi He; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2017-01-23       Impact factor: 10.048

6.  Test-retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering.

Authors:  Fan Zhang; Ye Wu; Isaiah Norton; Yogesh Rathi; Alexandra J Golby; Lauren J O'Donnell
Journal:  Hum Brain Mapp       Date:  2019-03-15       Impact factor: 5.038

7.  Motion-robust sub-millimeter isotropic diffusion imaging through motion corrected generalized slice dithered enhanced resolution (MC-gSlider) acquisition.

Authors:  Fuyixue Wang; Berkin Bilgic; Zijing Dong; Mary Kate Manhard; Ned Ohringer; Bo Zhao; Melissa Haskell; Stephen F Cauley; Qiuyun Fan; Thomas Witzel; Elfar Adalsteinsson; Lawrence L Wald; Kawin Setsompop
Journal:  Magn Reson Med       Date:  2018-04-01       Impact factor: 4.668

8.  Super-resolution Diffusion Tensor Imaging for Delineating the Facial Nerve in Patients with Vestibular Schwannoma.

Authors:  Lorenz Epprecht; Elliott D Kozin; Marco Piccirelli; Vivek V Kanumuri; Osama Tarabichi; Aaron Remenschneider; Frederick G Barker; Michael J McKenna; Alexander M Huber; Marybeth E Cunnane; Katherine L Reinshagen; Daniel J Lee
Journal:  J Neurol Surg B Skull Base       Date:  2019-03-01

9.  Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder.

Authors:  Ye Wu; Fan Zhang; Nikos Makris; Yuping Ning; Isaiah Norton; Shenglin She; Hongjun Peng; Yogesh Rathi; Yuanjing Feng; Huawang Wu; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-07-06       Impact factor: 6.556

Review 10.  Sparse Reconstruction Techniques in Magnetic Resonance Imaging: Methods, Applications, and Challenges to Clinical Adoption.

Authors:  Alice C Yang; Madison Kretzler; Sonja Sudarski; Vikas Gulani; Nicole Seiberlich
Journal:  Invest Radiol       Date:  2016-06       Impact factor: 6.016

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