Literature DB >> 29337279

Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis.

Fan Zhang1, Weining Wu2, Lipeng Ning3, Gloria McAnulty4, Deborah Waber4, Borjan Gagoski4, Kiera Sarill4, Hesham M Hamoda5, Yang Song6, Weidong Cai6, Yogesh Rathi3, Lauren J O'Donnell3.   

Abstract

This work presents a suprathreshold fiber cluster (STFC) method that leverages the whole brain fiber geometry to enhance statistical group difference analyses. The proposed method consists of 1) a well-established study-specific data-driven tractography parcellation to obtain white matter tract parcels and 2) a newly proposed nonparametric, permutation-test-based STFC method to identify significant differences between study populations. The basic idea of our method is that a white matter parcel's neighborhood (nearby parcels with similar white matter anatomy) can support the parcel's statistical significance when correcting for multiple comparisons. We propose an adaptive parcel neighborhood strategy to allow suprathreshold fiber cluster formation that is robust to anatomically varying inter-parcel distances. The method is demonstrated by application to a multi-shell diffusion MRI dataset from 59 individuals, including 30 attention deficit hyperactivity disorder patients and 29 healthy controls. Evaluations are conducted using both synthetic and in-vivo data. The results indicate that the STFC method gives greater sensitivity in finding group differences in white matter tract parcels compared to several traditional multiple comparison correction methods.
Copyright © 2018 Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 29337279      PMCID: PMC5857470          DOI: 10.1016/j.neuroimage.2018.01.006

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  100 in total

Review 1.  Diffusion tensor imaging in attention deficit/hyperactivity disorder: a systematic review and meta-analysis.

Authors:  Hanneke van Ewijk; Dirk J Heslenfeld; Marcel P Zwiers; Jan K Buitelaar; Jaap Oosterlaan
Journal:  Neurosci Biobehav Rev       Date:  2012-01-24       Impact factor: 8.989

2.  Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template.

Authors:  Susumu Mori; Kenichi Oishi; Hangyi Jiang; Li Jiang; Xin Li; Kazi Akhter; Kegang Hua; Andreia V Faria; Asif Mahmood; Roger Woods; Arthur W Toga; G Bruce Pike; Pedro Rosa Neto; Alan Evans; Jiangyang Zhang; Hao Huang; Michael I Miller; Peter van Zijl; John Mazziotta
Journal:  Neuroimage       Date:  2008-01-03       Impact factor: 6.556

3.  Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference.

Authors:  Stephen M Smith; Thomas E Nichols
Journal:  Neuroimage       Date:  2008-04-11       Impact factor: 6.556

4.  Sparse multi-shell diffusion imaging.

Authors:  Yogesh Rathi; O Michailovich; K Setsompop; S Bouix; M E Shenton; C F Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

5.  Mean apparent propagator (MAP) MRI: a novel diffusion imaging method for mapping tissue microstructure.

Authors:  Evren Özarslan; Cheng Guan Koay; Timothy M Shepherd; Michal E Komlosh; M Okan İrfanoğlu; Carlo Pierpaoli; Peter J Basser
Journal:  Neuroimage       Date:  2013-04-13       Impact factor: 6.556

6.  Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: application to normal elderly and Alzheimer's disease participants.

Authors:  Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li; Kazi Akhter; Jiangyang Zhang; John T Hsu; Michael I Miller; Peter C M van Zijl; Marilyn Albert; Constantine G Lyketsos; Roger Woods; Arthur W Toga; G Bruce Pike; Pedro Rosa-Neto; Alan Evans; John Mazziotta; Susumu Mori
Journal:  Neuroimage       Date:  2009-06       Impact factor: 6.556

7.  White matter defects in first episode psychosis patients: a voxelwise analysis of diffusion tensor imaging.

Authors:  Rocío Pérez-Iglesias; Diana Tordesillas-Gutiérrez; Gareth J Barker; Philip K McGuire; Roberto Roiz-Santiañez; Ignacio Mata; Enrique Marco de Lucas; Fernando Quintana; Jose L Vazquez-Barquero; Benedicto Crespo-Facorro
Journal:  Neuroimage       Date:  2009-07-18       Impact factor: 6.556

8.  Reduced white matter integrity in attention-deficit hyperactivity disorder.

Authors:  Liberty S Hamilton; Jennifer G Levitt; Joseph O'Neill; Jeffry R Alger; Eileen Luders; Owen R Phillips; Rochelle Caplan; Arthur W Toga; James McCracken; Katherine L Narr
Journal:  Neuroreport       Date:  2008-11-19       Impact factor: 1.837

9.  Mapping human whole-brain structural networks with diffusion MRI.

Authors:  Patric Hagmann; Maciej Kurant; Xavier Gigandet; Patrick Thiran; Van J Wedeen; Reto Meuli; Jean-Philippe Thiran
Journal:  PLoS One       Date:  2007-07-04       Impact factor: 3.240

10.  Joint Multi-Fiber NODDI Parameter Estimation and Tractography Using the Unscented Information Filter.

Authors:  Chinthala P Reddy; Yogesh Rathi
Journal:  Front Neurosci       Date:  2016-04-20       Impact factor: 4.677

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  7 in total

1.  Deep white matter analysis (DeepWMA): Fast and consistent tractography segmentation.

Authors:  Fan Zhang; Suheyla Cetin Karayumak; Nico Hoffmann; Yogesh Rathi; Alexandra J Golby; Lauren J O'Donnell
Journal:  Med Image Anal       Date:  2020-06-24       Impact factor: 8.545

2.  An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.

Authors:  Fan Zhang; Ye Wu; Isaiah Norton; Laura Rigolo; Yogesh Rathi; Nikos Makris; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-06-18       Impact factor: 6.556

3.  Test-retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering.

Authors:  Fan Zhang; Ye Wu; Isaiah Norton; Yogesh Rathi; Alexandra J Golby; Lauren J O'Donnell
Journal:  Hum Brain Mapp       Date:  2019-03-15       Impact factor: 5.038

Review 4.  Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review.

Authors:  Fan Zhang; Alessandro Daducci; Yong He; Simona Schiavi; Caio Seguin; Robert E Smith; Chun-Hung Yeh; Tengda Zhao; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2022-01-01       Impact factor: 7.400

5.  Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder.

Authors:  Ye Wu; Fan Zhang; Nikos Makris; Yuping Ning; Isaiah Norton; Shenglin She; Hongjun Peng; Yogesh Rathi; Yuanjing Feng; Huawang Wu; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-07-06       Impact factor: 6.556

6.  The Organization of Frontostriatal Brain Wiring in Healthy Subjects Using a Novel Diffusion Imaging Fiber Cluster Analysis.

Authors:  J J Levitt; F Zhang; M Vangel; P G Nestor; Y Rathi; M Kubicki; M E Shenton; L J O'Donnell
Journal:  Cereb Cortex       Date:  2021-10-22       Impact factor: 4.861

7.  Tractostorm: The what, why, and how of tractography dissection reproducibility.

Authors:  Francois Rheault; Alessandro De Benedictis; Alessandro Daducci; Chiara Maffei; Chantal M W Tax; David Romascano; Eduardo Caverzasi; Felix C Morency; Francesco Corrivetti; Franco Pestilli; Gabriel Girard; Guillaume Theaud; Ilyess Zemmoura; Janice Hau; Kelly Glavin; Kesshi M Jordan; Kristofer Pomiecko; Maxime Chamberland; Muhamed Barakovic; Nil Goyette; Philippe Poulin; Quentin Chenot; Sandip S Panesar; Silvio Sarubbo; Laurent Petit; Maxime Descoteaux
Journal:  Hum Brain Mapp       Date:  2020-01-10       Impact factor: 5.038

  7 in total

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