| Literature DB >> 24502462 |
Marieke J van der Werf1, Csaba Ködmön, Vera Katalinić-Janković, Tiina Kummik, Hanna Soini, Elvira Richter, Dimitrios Papaventsis, Enrico Tortoli, Monique Perrin, Dick van Soolingen, Manca Zolnir-Dovč, Vibeke Ostergaard Thomsen.
Abstract
BACKGROUND: Since non-tuberculous mycobacteria (NTM) disease is not notifiable in most European Union (EU) and European Economic Area (EEA) countries, the epidemiological situation of the >150 NTM species is largely unknown. We aimed to collect data on the frequency of NTM detection and NTM species types in EU/EEA countries.Entities:
Mesh:
Year: 2014 PMID: 24502462 PMCID: PMC3922012 DOI: 10.1186/1471-2334-14-62
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Detection, identification and drug sensitivity testing procedures for non-tuberculous mycobacteria (NTM) in 10 European Union countries
| Croatia | Smear microscopy and culture on solid and liquid media | GenoType Mycobacterium CM/AS (Hain Lifescience, Nehren, Germany) supplemented with phenotypic analysis including examination of growth characteristics, temperature tolerance, pigmentation and biochemical properties | For rapidly growing species* by E-test (AB Biodisk, Solna, Sweden) strips or minimum inhibitory concentration (MIC) testing. |
| Denmark | Smear microscopy, culture on solid (Löwenstein-Jensen) and liquid media (BD Bactec MGIT 960) and PCR | GenoType Mycobacterium CM/AS (Hain Lifescience, Nehren, Germany) supplemented by 16S rDNA sequencing and/or other methods | For rapid growing species: MIC determination on TREK microwell plates (TREK Diagnostic Systems, Cleveland, Ohio, United States of America). For slow growing species only at specific request of clinician |
| Estonia | Smear microscopy, culture on solid media (e.g. Löwenstein-Jensen) and liquid media (BD Bactec MGIT 960) | GenoType Mycobacterium CM/AS (Hain Lifescience, Nehren, Germany) | Not performed |
| Finland | Culture on solid media (e.g. Löwenstein-Jensen or Middlebrook 7H11) and liquid media (BD Bactec MGIT 960) | GenoType Mycobacterium CM/AS (Hain Lifescience, Nehren, Germany) and, if needed, 16S rDNA sequencing | For species belonging to |
| Germany | Smear microscopy and culture on solid and liquid media, and for certain specimens (skin, lymph nodes, sputum from CF patients) incubation on specific media at lower temperatures (31°C) | Line probe assays or sequence analysis(16S rDNA, ITS, | Slowly growing species: modified proportion method using MGIT liquid media (BACTEC MGIT 960 or manual system). Drugs tested comprise first line TB drugs as well as clarithromycin or on special request fluoroquinolones. For other slow growing species, i.e |
| Greece | Smear microscopy and culture on solid and liquid media | GenoType Mycobacterium CM/AS (Hain Lifescience, Nehren, Germany) and when requested by the clinicians, 16S rDNA and hsp65 gene sequencing | For slow growing species, the modified proportion method using BACTEC MGIT 960 or LJ is applied. First line anti-TB drugs and clarithromycin are tested according to ATS/ IDSA guidelines [ |
| Italy | Culture on solid (Löwenstein-Jensen) and liquid media (BD Bactec MGIT 960) | GenoType Mycobacterium CM/AS (Hain Lifescience, Nehren, Germany) and sequencing of genetic regions (16S rRNA and/or | For rapid growing species: MIC determination (Rapidly growing mycobacteria panel, TREK Diagnostic Systems (Cleveland, Ohio, United States of America). For slow growing species: susceptibility to chlarithromycin is determined for some cases. |
| Luxembourg | Culture on solid (Lowenstein Jensen, Coletsos and Middlebrook 7H11) and liquid media (BD Bactec MGIT 960) | To distinguish MTB complex from NTM isolates the Anyplex MTB/NTM Real Time detection kit (Seegene) is used. In a second stage, NTM specimens are sequenced (sequencing of the hsp65 gene) | Not performed in country. On explicit request of the doctor, the isolate is sent to the Belgian Scientific Institute for Public Health |
| Netherlands | Culture on liquid media (BD Bactec MGIT 960) | Commercially available reverse line blot assays | 7H10 agar dilution method [ |
| Slovenia | Culture on solid and liquid media. Some clinical samples are incubated at 30°C and on media with special supplements. | GenoType Mycobacterium CM/AS (Hain Lifescience, Nehren, Germany), colony morphology on transparent medium Middlebrook 7H10, and some phenotypic tests | At specific request of clinician for rapid growing species and some slow growing species: E-test (AB Biodisk, Solna, Sweden) |
*For definition of slow growing and rapidly growing species see reference [24].
Species distribution of non-tuberculous mycobacteria isolated in 10 European Union countries
| | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 33 | 86 | 308 | 1,568 | 176 | 101 | 350 | 23 | 1,274 | 349 | 4,268 | |
| 377 | 9 | 96 | 1,286 | 176 | 31 | 253 | 26 | 623 | 365 | 3,242 | |
| 122 | 7 | 12 | | 13 | 9 | 687 | 13 | 77 | 615 | 1,555 | |
| 23 | 15 | 52 | 636 | 272 | 49 | 104 | 3 | 359 | 156 | 1,669 | |
| 98 | 2 | 65 | 521 | 68 | 66 | 144 | | 239 | 150 | 1,353 | |
| 8 | 5 | 11 | 53 | 58 | 22 | 39 | 6 | 283 | 181 | 666 | |
| 31 | 3 | 20 | 179 | 56 | 37 | 55 | 4 | 173 | 32 | 590 | |
| 25 | 10 | 17 | 94 | 37 | 17 | 111 | 11 | 228 | 24 | 574 | |
| | 12 | 14 | 184 | 10 | 7 | 11 | 6 | 108 | 22 | 374 | |
| 6 | | 5 | 246 | 4 | 6 | 45 | | 5 | | 317 | |
| | 7 | 3 | 50 | 29 | 5 | 15 | 4 | 115 | 6 | 234 | |
| 52 | | | 151 | | | 16 | | 6 | | 225 | |
| 9 | 3 | 15 | 81 | | 20 | 33 | 1 | 6 | | 168 | |
| | 3 | | 69 | 5 | | 21 | 3 | 64 | | 165 | |
| | | | 106 | 1 | | 4 | 3 | 10 | | 124 | |
| | | | | | | 48 | 5 | 68 | | 121 | |
| 1 | | 3 | 87 | 6 | | 9 | | 14 | | 120 | |
| 18 | | | 38 | 1 | | 41 | | 1 | 21 | 120 | |
| | | | | 7 | | 83 | 3 | 8 | | 101 | |
| 3 | 7 | 1 | | 3 | 8 | 12 | 1 | 11 | 21 | 67 | |
| 3 | | | | 6 | | 38 | | 15 | | 62 | |
| 2 | | 16 | | | | 12 | | 12 | 12 | 54 | |
| | 2 | 3 | | 13 | | 11 | | 17 | 6 | 52 | |
| | | | | 1 | | 46 | | 1 | | 48 | |
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| | | | | 8 | | 5 | | 18 | | 31 | |
| 4 | | | | 7 | | 3 | | 13 | | 27 | |
| | | | | 26 | | 1 | | | | 27 | |
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| 15 | | | | | | 2 | | | | 17 | |
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| Unknown | | 8 | 57 | 429# | 41 | 48 | 96 | 2 | 186 | 279 | 717 |
| Total | 848 | 182 | 698 | 5,778 | 1,068 | 426 | 2,498 | 123 | 3,996 | 2,240 | 17,857 |
*Croatia, Estonia, Germany, Greece, Luxembourg and Slovenia report positive specimens, Denmark, Finland, Italy and the Netherlands report patients with NTM.
#Unknown species and rare species.
Specimen types from which non-tuberculous mycobacteria were isolated*
| Sputum | 2,839 |
| Other pulmonary | 1,160 |
| Bronchial aspirate | 191 |
| Urine | 117 |
| Biopsy | 74 |
| Blood | 47 |
| Stool | 45 |
| Other body fluid | 28 |
| Gastric lavage | 22 |
| Lymph node aspiration | 20 |
| Pleural fluid | 14 |
| Cutis | 8 |
| Cerebrospinal fluid | 3 |
| Not specified | 2,276 |
*Data from Croatia, Italy, Luxembourg and Slovenia.
Number of specimens tested and specimens positive for complex and non-tuberculous mycobacteria (NTM) in Estonia, Greece, Croatia, Luxembourg, and Slovenia
| Croatia | 166,561 | 8,375 (5.0) | 848 (0.5) |
| Estonia | 83,655 | 9,475 (11.3) | 698 (0.8) |
| Greece | 114,106 | 3,194 (2.8) | 426 (0.4) |
| Luxembourg | 6,113 | 277 (4.5) | 123 (2.0) |
| Slovenia | 148,744 | 11,368 (7.6) | 2,240 (1.5) |