Literature DB >> 24496042

Characterization and differential expression of CPD and 6-4 DNA photolyases in Xiphophorus species and interspecies hybrids.

Dylan J Walter1, Mikki Boswell2, Sara M Volk de García3, Sean M Walter4, Erik W Breitenfeldt5, William Boswell6, Ronald B Walter7.   

Abstract

Among the many Xiphophorus interspecies hybrid tumor models are those that exhibit ultraviolet light (UVB) induced melanoma. In previous studies, assessment of UVB induced DNA damage and nucleotide excision DNA repair has been performed in parental lines and interspecies hybrids. Species and hybrid specific differences in the levels of DNA damage induced and the dark repair rates for cyclobutane pyrimidine dimers (CPDs) and 6-4 pyrimidine pyrimidine photoproducts (6-4PPs) have been reported. However, UVB induced DNA lesions in Xiphophorus fishes are thought to primarily be repaired via light dependent CPD and 6-4PP specific photolyases. Photolyases are of evolutionary interest since they are ancient and presumably function solely to ameliorate the deleterious effects of UVB exposure. Herein, we report results from detailed studies of CPD and 6-4PP photolyase gene expression within several Xiphophorus tissues. We determined photolyase gene expression patterns before and after exposure to fluorescent light in X. maculatus, X. couchianus, and for F1 interspecies hybrids produced from crossing these two parental lines (X. maculatus Jp 163 B×X. couchianus). We present novel results showing these two photolyase genes exhibit species, tissue, and hybrid-specific differences in basal and light induced gene expression.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  6–4 pyrimidine pyrimidone photoproduct; Cyclobutane pyrimidine dimer; Gene expression; Interspecies hybrid; Light induced; Photolyase; Xiphophorus; q-RTPCR

Mesh:

Substances:

Year:  2014        PMID: 24496042      PMCID: PMC4032606          DOI: 10.1016/j.cbpc.2014.01.006

Source DB:  PubMed          Journal:  Comp Biochem Physiol C Toxicol Pharmacol        ISSN: 1532-0456            Impact factor:   3.228


  33 in total

1.  A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach.

Authors:  S Whelan; N Goldman
Journal:  Mol Biol Evol       Date:  2001-05       Impact factor: 16.240

2.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

Review 3.  DNA repair in mammalian cells: Direct DNA damage reversal: elegant solutions for nasty problems.

Authors:  A P M Eker; C Quayle; I Chaves; G T J van der Horst
Journal:  Cell Mol Life Sci       Date:  2009-03       Impact factor: 9.261

4.  Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes.

Authors:  Rongfeng Cui; Molly Schumer; Karla Kruesi; Ronald Walter; Peter Andolfatto; Gil G Rosenthal
Journal:  Evolution       Date:  2013-04-04       Impact factor: 3.694

5.  Purification, cDNA cloning, and expression profiles of the cyclobutane pyrimidine dimer photolyase of Xenopus laevis.

Authors:  Hiroaki Tanida; Eiji Tahara; Miwa Mochizuki; Yukiko Yamane; Masaru Ryoji
Journal:  FEBS J       Date:  2005-12       Impact factor: 5.542

6.  Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4)photolyase.

Authors:  T Todo; S T Kim; K Hitomi; E Otoshi; T Inui; H Morioka; H Kobayashi; E Ohtsuka; H Toh; M Ikenaga
Journal:  Nucleic Acids Res       Date:  1997-02-15       Impact factor: 16.971

7.  Visible light-inducible photolyase gene from the goldfish Carassius auratus.

Authors:  S Yasuhira; A Yasui
Journal:  J Biol Chem       Date:  1992-12-25       Impact factor: 5.157

8.  Common light signaling pathways controlling DNA repair and circadian clock entrainment in zebrafish.

Authors:  Jun Hirayama; Norio Miyamura; Yoshimi Uchida; Yoichi Asaoka; Reiko Honda; Kenji Sawanobori; Takeshi Todo; Takuro Yamamoto; Paolo Sassone-Corsi; Hiroshi Nishina
Journal:  Cell Cycle       Date:  2009-09-06       Impact factor: 4.534

9.  Relative base excision repair in Xiphophorus fish tissue extracts.

Authors:  R B Walter; H M Sung; R D Obermoeller; D L Mitchell; G W Intano; C A Walter
Journal:  Mar Biotechnol (NY)       Date:  2001-06       Impact factor: 3.619

10.  Comprehensive phylogenetic analysis of all species of swordtails and platies (Pisces: Genus Xiphophorus) uncovers a hybrid origin of a swordtail fish, Xiphophorus monticolus, and demonstrates that the sexually selected sword originated in the ancestral lineage of the genus, but was lost again secondarily.

Authors:  Ji Hyoun Kang; Manfred Schartl; Ronald B Walter; Axel Meyer
Journal:  BMC Evol Biol       Date:  2013-01-29       Impact factor: 3.260

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  12 in total

1.  Comparison of Xiphophorus and human melanoma transcriptomes reveals conserved pathway interactions.

Authors:  Yuan Lu; Mikki Boswell; William Boswell; Susanne Kneitz; Michael Hausmann; Barbara Klotz; Janine Regneri; Markita Savage; Angel Amores; John Postlethwait; Wesley Warren; Manfred Schartl; Ronald Walter
Journal:  Pigment Cell Melanoma Res       Date:  2018-01-29       Impact factor: 4.693

2.  Molecular genetic analysis of the melanoma regulatory locus in Xiphophorus interspecies hybrids.

Authors:  Yuan Lu; Mikki Boswell; William Boswell; Susanne Kneitz; Michael Hausmann; Barbara Klotz; Janine Regneri; Markita Savage; Angel Amores; John Postlethwait; Wesley Warren; Manfred Schartl; Ronald Walter
Journal:  Mol Carcinog       Date:  2017-04-13       Impact factor: 4.784

3.  Characterization of basal gene expression trends over a diurnal cycle in Xiphophorus maculatus skin, brain and liver.

Authors:  Yuan Lu; Jose Reyes; Sean Walter; Trevor Gonzalez; Geraldo Medrano; Mikki Boswell; William Boswell; Markita Savage; Ronald Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2017-12-05       Impact factor: 3.228

4.  Molecular genetic response to varied wavelengths of light in Xiphophorus maculatus skin.

Authors:  Jordan Chang; Yuan Lu; William T Boswell; Mikki Boswell; Kaela L Caballero; Ronald B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2015-10-14       Impact factor: 3.228

5.  Molecular genetic response of Xiphophorus maculatus-X. couchianus interspecies hybrid skin to UVB exposure.

Authors:  Yuan Lu; Mikki Bowswell; William Bowswell; Kuan Yang; Manfred Schartl; Ronald B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2015-08-06       Impact factor: 3.228

6.  Sex-specific molecular genetic response to UVB exposure in Xiphophorus maculatus skin.

Authors:  William Boswell; Mikki Boswell; James Titus; Markita Savage; Yuan Lu; Jianjun Shen; Ronald B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2015-08-06       Impact factor: 3.228

7.  Exposure to fluorescent light triggers down regulation of genes involved with mitotic progression in Xiphophorus skin.

Authors:  Ronald B Walter; Dylan J Walter; William T Boswell; Kaela L Caballero; Mikki Boswell; Yuan Lu; Jordan Chang; Markita G Savage
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2015-09-01       Impact factor: 3.228

8.  The transcriptional response of skin to fluorescent light exposure in viviparous (Xiphophorus) and oviparous (Danio, Oryzias) fishes.

Authors:  Mikki Boswell; William Boswell; Yuan Lu; Markita Savage; Zachary Mazurek; Jordan Chang; Jeanot Muster; Ronald Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2017-10-07       Impact factor: 3.228

9.  Exposure to 4100K fluorescent light elicits sex specific transcriptional responses in Xiphophorus maculatus skin.

Authors:  William T Boswell; Mikki Boswell; Dylan J Walter; Kaela L Navarro; Jordan Chang; Yuan Lu; Markita G Savage; Jianjun Shen; Ronald B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2017-09-29       Impact factor: 3.228

10.  Fluorescent light exposure incites acute and prolonged immune responses in zebrafish (Danio rerio) skin.

Authors:  Trevor J Gonzalez; Yuan Lu; Mikki Boswell; William Boswell; Geraldo Medrano; Sean Walter; Samuel Ellis; Markita Savage; Zoltan M Varga; Christian Lawrence; George Sanders; Ronald B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2017-09-29       Impact factor: 3.228

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