Literature DB >> 26254713

Molecular genetic response of Xiphophorus maculatus-X. couchianus interspecies hybrid skin to UVB exposure.

Yuan Lu1, Mikki Bowswell2, William Bowswell3, Kuan Yang4, Manfred Schartl5, Ronald B Walter6.   

Abstract

The phenotypic and genetic similarities between Xiphophorus and human melanoma render Xiphophorus a useful animal model for studying the genetic basis of melanoma etiology. In the Xiphophorus model, melanoma has been shown to be inducible by ultraviolet light (UVB) exposure among interspecies hybrids, but not in parental line fish similarly treated. This leads to questions of what genes are responsive to UVB exposure in the skin of the interspecies hybrids, as well as how parental alleles in hybrids may be differentially regulated and the potential roles they may play in induced melanomagenesis. To address these questions, we produced X. maculatus Jp 163 B×X. couchianus (Sp-Couch) F1 hybrid fish, exposed both hybrid and parental fish to UVB, and performed gene expression profiling of the skin using RNA-Seq methodology. We characterized a group of unique UVB-responsive genes in Sp-Couch hybrid including dct, pmela, tyr, tyrp1a, slc2a11b, rab38a, rab27, tspan10, slc45a2, oca2, slc24a5, ptn and mitfa. These genes are associated with melanin production and melanocyte proliferation. They were also up-regulated in Sp-Couch hybrid, indicating that their UVB response is hybridization initiated. In the hybrid, several melanin production and pigmentation related genes, including slc45a2, tspan10, dct, slc2a11b and ptn showed either X. couchianus or X. maculatus allele specific expression. The finding that these genes exhibit allele specific expression regulatory mechanisms in Sp-Couch hybrids, but do not exhibit a corresponding UVB response in either one of the parental fishes, may suggest UVB targets and imply mechanisms regarding the susceptibility of Sp-Couch to induced melanomagenesis.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Allele specific gene expression; Differential gene expression; Hybrid; Melanoma; Pigment; RNA-Seq; UVB; Ultraviolet light

Mesh:

Year:  2015        PMID: 26254713      PMCID: PMC4662913          DOI: 10.1016/j.cbpc.2015.07.011

Source DB:  PubMed          Journal:  Comp Biochem Physiol C Toxicol Pharmacol        ISSN: 1532-0456            Impact factor:   3.228


  48 in total

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5.  Identifying differential expression genes and single nucleotide variations using RNA-seq in metastatic melanoma.

Authors:  D Liu; Z G Zhao; Z L Jiao; H J Li
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6.  The Pmel 17/silver locus protein. Characterization and investigation of its melanogenic function.

Authors:  T Kobayashi; K Urabe; S J Orlow; K Higashi; G Imokawa; B S Kwon; B Potterf; V J Hearing
Journal:  J Biol Chem       Date:  1994-11-18       Impact factor: 5.157

7.  Decreased levels of (6-4) photoproduct excision repair in hybrid fish of the genus Xiphophorus.

Authors:  David L Mitchell; Rodney S Nairn; Dennis A Johnston; Michelle Byrom; Steven Kazianis; Ronald B Walter
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8.  Functional analysis of slac2-a/melanophilin as a linker protein between Rab27A and myosin Va in melanosome transport.

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  14 in total

1.  Comparison of Xiphophorus and human melanoma transcriptomes reveals conserved pathway interactions.

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2.  Molecular genetic analysis of the melanoma regulatory locus in Xiphophorus interspecies hybrids.

Authors:  Yuan Lu; Mikki Boswell; William Boswell; Susanne Kneitz; Michael Hausmann; Barbara Klotz; Janine Regneri; Markita Savage; Angel Amores; John Postlethwait; Wesley Warren; Manfred Schartl; Ronald Walter
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3.  Characterization of basal gene expression trends over a diurnal cycle in Xiphophorus maculatus skin, brain and liver.

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Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2017-12-05       Impact factor: 3.228

4.  Molecular genetic response to varied wavelengths of light in Xiphophorus maculatus skin.

Authors:  Jordan Chang; Yuan Lu; William T Boswell; Mikki Boswell; Kaela L Caballero; Ronald B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2015-10-14       Impact factor: 3.228

5.  Fluorescent light exposure incites acute and prolonged immune responses in zebrafish (Danio rerio) skin.

Authors:  Trevor J Gonzalez; Yuan Lu; Mikki Boswell; William Boswell; Geraldo Medrano; Sean Walter; Samuel Ellis; Markita Savage; Zoltan M Varga; Christian Lawrence; George Sanders; Ronald B Walter
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6.  Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly.

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7.  Transcriptome assembly and candidate genes involved in nutritional programming in the swordtail fish Xiphophorus multilineatus.

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9.  Waveband specific transcriptional control of select genetic pathways in vertebrate skin (Xiphophorus maculatus).

Authors:  Ronald B Walter; Mikki Boswell; Jordan Chang; William T Boswell; Yuan Lu; Kaela Navarro; Sean M Walter; Dylan J Walter; Raquel Salinas; Markita Savage
Journal:  BMC Genomics       Date:  2018-05-10       Impact factor: 3.969

Review 10.  Functional implications of Rab27 GTPases in Cancer.

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Journal:  Cell Commun Signal       Date:  2018-08-06       Impact factor: 5.712

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