Literature DB >> 2448777

Creation of AUG initiation codons by addition of uridines within cytochrome b transcripts of kinetoplastids.

J E Feagin1, J M Shaw, L Simpson, K Stuart.   

Abstract

The cytochrome b gene of Trypanosoma brucei has an ATG codon near its 5' end but the cytochrome b genes of the related kinetoplastids Leishmania tarentolae and Crithidia fasciculata lack an ATG. Recent results have shown that 34 uridines that are not encoded in the genome are added within the 5' end of T. brucei cytochrome b transcripts during or after transcription. These additions create an AUG in the transcript that is 20 amino acids upstream of the AUG predicted from the genomic sequence. We report here that the cytochrome b transcripts of L. tarentolae and C. fasciculata also contain added uridines within their 5' ends. The additions occur in similar numbers and positions and an in frame AUG is created at a similar site in all three species. These data strongly suggest that the created AUG functions as the initiation codon for cytochrome b in these species. Since some other kinetoplastid mitochondrial genes also lack conventional initiation codons, creation of initiation codons may be an important function of uridine addition.

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Year:  1988        PMID: 2448777      PMCID: PMC279586          DOI: 10.1073/pnas.85.2.539

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Synchronization of Leishmania tarentolae by hydroxyurea.

Authors:  L Simpson; P Braly
Journal:  J Protozool       Date:  1970-11

2.  The maxicircle of Trypanosoma brucei kinetoplast DNA encodes apocytochrome b.

Authors:  B J Johnson; G C Hill; J E Donelson
Journal:  Mol Biochem Parasitol       Date:  1984-10       Impact factor: 1.759

3.  The sequence of the gene for cytochrome c oxidase subunit I, a frameshift containing gene for cytochrome c oxidase subunit II and seven unassigned reading frames in Trypanosoma brucei mitochondrial maxi-circle DNA.

Authors:  L A Hensgens; J Brakenhoff; B F De Vries; P Sloof; M C Tromp; J H Van Boom; R Benne
Journal:  Nucleic Acids Res       Date:  1984-10-11       Impact factor: 16.971

Review 4.  The molecular biology of trypanosomes.

Authors:  P T Englund; S L Hajduk; J C Marini
Journal:  Annu Rev Biochem       Date:  1982       Impact factor: 23.643

5.  Isolation of kinetoplast-mitochondrial complexes from Leishmania tarentolae.

Authors:  P Braly; L Simpson; F Kretzer
Journal:  J Protozool       Date:  1974-11

6.  Primary sequence and partial secondary structure of the 12S kinetoplast (mitochondrial) ribosomal RNA from Leishmania tarentolae: conservation of peptidyl-transferase structural elements.

Authors:  V F de la Cruz; A M Simpson; J A Lake; L Simpson
Journal:  Nucleic Acids Res       Date:  1985-04-11       Impact factor: 16.971

7.  Identification of mitochondrial genes in Trypanosoma brucei and homology to cytochrome c oxidase II in two different reading frames.

Authors:  M Payne; V Rothwell; D P Jasmer; J E Feagin; K Stuart
Journal:  Mol Biochem Parasitol       Date:  1985-05       Impact factor: 1.759

8.  The IsTaR 1 serodeme of Trypanosoma brucei: development of a new serodeme.

Authors:  K Stuart; E Gobright; L Jenni; M Milhausen; L Thomashow; N Agabian
Journal:  J Parasitol       Date:  1984-10       Impact factor: 1.276

9.  A minimal ribosomal RNA: sequence and secondary structure of the 9S kinetoplast ribosomal RNA from Leishmania tarentolae.

Authors:  V F de la Cruz; J A Lake; A M Simpson; L Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

10.  Developmentally regulated addition of nucleotides within apocytochrome b transcripts in Trypanosoma brucei.

Authors:  J E Feagin; D P Jasmer; K Stuart
Journal:  Cell       Date:  1987-05-08       Impact factor: 41.582

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  41 in total

1.  Evidence for the frequent use of TTG as the translation initiation codon of mitochondrial protein genes in the nematodes, Ascaris suum and Caenorhabditis elegans.

Authors:  R Okimoto; J L Macfarlane; D R Wolstenholme
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

Review 2.  mRNA processing in the Trypanosomatidae.

Authors:  K Perry; N Agabian
Journal:  Experientia       Date:  1991-02-15

Review 3.  Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates.

Authors:  Julius Lukes; Hassan Hashimi; Alena Zíková
Journal:  Curr Genet       Date:  2005-11-04       Impact factor: 3.886

4.  Structure of a mitochondrial ribosome with minimal RNA.

Authors:  Manjuli R Sharma; Timothy M Booth; Larry Simpson; Dmitri A Maslov; Rajendra K Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-03       Impact factor: 11.205

Review 5.  High throughput sequencing revolution reveals conserved fundamentals of U-indel editing.

Authors:  Sara L Zimmer; Rachel M Simpson; Laurie K Read
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-06-11       Impact factor: 9.957

6.  Quantitation of RNA editing substrates, products and potential intermediates: implications for developmental regulation.

Authors:  G R Riley; P J Myler; K Stuart
Journal:  Nucleic Acids Res       Date:  1995-02-25       Impact factor: 16.971

7.  Internal frameshifts within the mitochondrial genes for cytochrome oxidase subunit II and maxicircle unidentified reading frame 3 of Leishmania tarentolae are corrected by RNA editing: evidence for translation of the edited cytochrome oxidase subunit II mRNA.

Authors:  J M Shaw; D Campbell; L Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  1989-08       Impact factor: 11.205

8.  The 3'-untranslated region of cytochrome oxidase II mRNA functions in RNA editing of African trypanosomes exclusively as a cis guide RNA.

Authors:  Daniel E Golden; Stephen L Hajduk
Journal:  RNA       Date:  2004-12-01       Impact factor: 4.942

9.  The zinc-fingers of KREPA3 are essential for the complete editing of mitochondrial mRNAs in Trypanosoma brucei.

Authors:  Xuemin Guo; Nancy Lewis Ernst; Jason Carnes; Kenneth D Stuart
Journal:  PLoS One       Date:  2010-01-27       Impact factor: 3.240

10.  Structure of the Trypanosoma brucei p22 protein, a cytochrome oxidase subunit II-specific RNA-editing accessory factor.

Authors:  Mareen Sprehe; John C Fisk; Sarah M McEvoy; Laurie K Read; Maria A Schumacher
Journal:  J Biol Chem       Date:  2010-04-14       Impact factor: 5.157

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