Literature DB >> 24487062

Chemistry of natural glycan microarrays.

Xuezheng Song1, Jamie Heimburg-Molinaro2, Richard D Cummings2, David F Smith2.   

Abstract

Glycan microarrays have become indispensable tools for studying protein-glycan interactions. Along with chemo-enzymatic synthesis, glycans isolated from natural sources have played important roles in array development and will continue to be a major source of glycans. N-glycans and O-glycans from glycoproteins, and glycans from glycosphingolipids (GSLs) can be released from corresponding glycoconjugates with relatively mature methods, although isolation of large numbers and quantities of glycans is still very challenging. Glycosylphosphatidylinositol (GPI) anchors and glycosaminoglycans (GAGs) are less represented on current glycan microarrays. Glycan microarray development has been greatly facilitated by bifunctional fluorescent linkers, which can be applied in a 'Shotgun Glycomics' approach to incorporate isolated natural glycans. Glycan presentation on microarrays may affect glycan binding by GBPs, often through multivalent recognition by the GBP.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24487062      PMCID: PMC3940340          DOI: 10.1016/j.cbpa.2014.01.001

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  73 in total

1.  Sulfation patterns of glycosaminoglycans encode molecular recognition and activity.

Authors:  Cristal I Gama; Sarah E Tully; Naoki Sotogaku; Peter M Clark; Manish Rawat; Nagarajan Vaidehi; William A Goddard; Akinori Nishi; Linda C Hsieh-Wilson
Journal:  Nat Chem Biol       Date:  2006-07-30       Impact factor: 15.040

2.  Production of fluorous-based microarrays with uncharged carbohydrates.

Authors:  Sahana K Nagappayya; Nicola L B Pohl
Journal:  Methods Mol Biol       Date:  2012

3.  Recent advances and future challenges in glycan microarray technology.

Authors:  José L de Paz; Peter H Seeberger
Journal:  Methods Mol Biol       Date:  2012

4.  Versatile fluorescent derivatization of glycans for glycomic analysis.

Authors:  Baoyun Xia; Ziad S Kawar; Tongzhong Ju; Richard A Alvarez; Goverdhan P Sachdev; Richard D Cummings
Journal:  Nat Methods       Date:  2005-11       Impact factor: 28.547

Review 5.  Use of glycan microarrays to explore specificity of glycan-binding proteins.

Authors:  David F Smith; Xuezheng Song; Richard D Cummings
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

6.  Elucidating glycosaminoglycan-protein-protein interactions using carbohydrate microarray and computational approaches.

Authors:  Claude J Rogers; Peter M Clark; Sarah E Tully; Ravinder Abrol; K Christopher Garcia; William A Goddard; Linda C Hsieh-Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-31       Impact factor: 11.205

Review 7.  Glycan microarrays for decoding the glycome.

Authors:  Cory D Rillahan; James C Paulson
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

8.  Novel fluorescent glycan microarray strategy reveals ligands for galectins.

Authors:  Xuezheng Song; Baoyun Xia; Sean R Stowell; Yi Lasanajak; David F Smith; Richard D Cummings
Journal:  Chem Biol       Date:  2009-01-30

9.  Cation-independent mannose 6-phosphate receptor: a composite of distinct phosphomannosyl binding sites.

Authors:  Richard N Bohnsack; Xuezheng Song; Linda J Olson; Mariko Kudo; Russell R Gotschall; William M Canfield; Richard D Cummings; David F Smith; Nancy M Dahms
Journal:  J Biol Chem       Date:  2009-10-19       Impact factor: 5.157

10.  Glycomic analysis of human respiratory tract tissues and correlation with influenza virus infection.

Authors:  Trevenan Walther; Rositsa Karamanska; Renee W Y Chan; Michael C W Chan; Nan Jia; Gillian Air; Clark Hopton; Maria P Wong; Anne Dell; J S Malik Peiris; Stuart M Haslam; John M Nicholls
Journal:  PLoS Pathog       Date:  2013-03-14       Impact factor: 6.823

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  31 in total

Review 1.  Glycan microarrays of fluorescently-tagged natural glycans.

Authors:  Xuezheng Song; Jamie Heimburg-Molinaro; David F Smith; Richard D Cummings
Journal:  Glycoconj J       Date:  2015-04-16       Impact factor: 2.916

Review 2.  Glycomics and glycoproteomics of viruses: Mass spectrometry applications and insights toward structure-function relationships.

Authors:  John F Cipollo; Lisa M Parsons
Journal:  Mass Spectrom Rev       Date:  2020-04-29       Impact factor: 10.946

3.  Multivalent binding of concanavalin A on variable-density mannoside microarrays.

Authors:  Daniel J Valles; Yasir Naeem; Angelica Y Rozenfeld; Rawan W Aldasooky; Alexa M Wong; Carlos Carbonell; David R Mootoo; Adam B Braunschweig
Journal:  Faraday Discuss       Date:  2019-10-30       Impact factor: 4.008

4.  Microbe-focused glycan array screening platform.

Authors:  Andreas Geissner; Anika Reinhardt; Christoph Rademacher; Timo Johannssen; João Monteiro; Bernd Lepenies; Michel Thépaut; Franck Fieschi; Jana Mrázková; Michaela Wimmerova; Frank Schuhmacher; Sebastian Götze; Dan Grünstein; Xiaoqiang Guo; Heung Sik Hahm; Jeyakumar Kandasamy; Daniele Leonori; Christopher E Martin; Sharavathi G Parameswarappa; Sandip Pasari; Mark K Schlegel; Hidenori Tanaka; Guozhi Xiao; You Yang; Claney L Pereira; Chakkumkal Anish; Peter H Seeberger
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-22       Impact factor: 11.205

5.  Glycoarrays with engineered phages displaying structurally diverse oligosaccharides enable high-throughput detection of glycan-protein interactions.

Authors:  Eda Çelik; Anne A Ollis; Yi Lasanajak; Adam C Fisher; Göksu Gür; David F Smith; Matthew P DeLisa
Journal:  Biotechnol J       Date:  2014-10-31       Impact factor: 4.677

Review 6.  Glycomaterials for probing host-pathogen interactions and the immune response.

Authors:  Mia L Huang; Christopher J Fisher; Kamil Godula
Journal:  Exp Biol Med (Maywood)       Date:  2016-05-04

7.  Detecting Protein-Glycolipid Interactions Using Glycomicelles and CaR-ESI-MS.

Authors:  Ling Han; Elena N Kitova; John S Klassen
Journal:  J Am Soc Mass Spectrom       Date:  2016-08-22       Impact factor: 3.109

Review 8.  Glycan receptor specificity as a useful tool for characterization and surveillance of influenza A virus.

Authors:  Rahul Raman; Kannan Tharakaraman; Zachary Shriver; Akila Jayaraman; V Sasisekharan; Ram Sasisekharan
Journal:  Trends Microbiol       Date:  2014-08-06       Impact factor: 17.079

Review 9.  Recent advances in employing molecular modelling to determine the specificity of glycan-binding proteins.

Authors:  Oliver C Grant; Robert J Woods
Journal:  Curr Opin Struct Biol       Date:  2014-08-07       Impact factor: 6.809

Review 10.  Glycobiology simplified: diverse roles of glycan recognition in inflammation.

Authors:  Ronald L Schnaar
Journal:  J Leukoc Biol       Date:  2016-03-22       Impact factor: 4.962

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