Literature DB >> 24485761

Genetically encoded fluorescent biosensors for live-cell visualization of protein phosphorylation.

Laurel Oldach1, Jin Zhang2.   

Abstract

Fluorescence-based, genetically encodable biosensors are widely used tools for real-time analysis of biological processes. Over the last few decades, the number of available genetically encodable biosensors and the types of processes they can monitor have increased rapidly. Here, we aim to introduce the reader to general principles and practices in biosensor development and highlight ways in which biosensors can be used to illuminate outstanding questions of biological function. Specifically, we focus on sensors developed for monitoring kinase activity and use them to illustrate some common considerations for biosensor design. We describe several uses to which kinase and second-messenger biosensors have been put, and conclude with considerations for the use of biosensors once they are developed. Overall, as fluorescence-based biosensors continue to diversify and improve, we expect them to continue to be widely used as reliable and fruitful tools for gaining deeper insights into cellular and organismal function.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24485761      PMCID: PMC4050661          DOI: 10.1016/j.chembiol.2013.12.012

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  138 in total

1.  Genetically encoded fluorescent reporters of protein tyrosine kinase activities in living cells.

Authors:  A Y Ting; K H Kain; R L Klemke; R Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-18       Impact factor: 11.205

2.  Experience-dependent regulation of CaMKII activity within single visual cortex synapses in vivo.

Authors:  Amanda F Mower; Showming Kwok; Hongbo Yu; Ania K Majewska; Ken-Ichi Okamoto; Yasunori Hayashi; Mriganka Sur
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

3.  Monitoring ATM kinase activity in living cells.

Authors:  Sam A Johnson; Zhongsheng You; Tony Hunter
Journal:  DNA Repair (Amst)       Date:  2007-04-10

4.  An intracellular conformational sensor assay for Abl T315I.

Authors:  Vicki Zhou; Xiaoqi Gao; Shulin Han; Achim Brinker; Jeremy S Caldwell; Xiang-Ju Gu
Journal:  Anal Biochem       Date:  2008-11-20       Impact factor: 3.365

5.  Ca2+/calmodulin disrupts AKAP79/150 interactions with KCNQ (M-Type) K+ channels.

Authors:  Manjot Bal; Jie Zhang; Ciria C Hernandez; Oleg Zaika; Mark S Shapiro
Journal:  J Neurosci       Date:  2010-02-10       Impact factor: 6.167

6.  Spatiotemporal analysis of differential Akt regulation in plasma membrane microdomains.

Authors:  Xinxin Gao; Jin Zhang
Journal:  Mol Biol Cell       Date:  2008-08-13       Impact factor: 4.138

7.  Genetically encoded probe for fluorescence lifetime imaging of CaMKII activity.

Authors:  Showming Kwok; Claudia Lee; Susana A Sánchez; Theodore L Hazlett; Enrico Gratton; Yasunori Hayashi
Journal:  Biochem Biophys Res Commun       Date:  2008-02-25       Impact factor: 3.575

Review 8.  Multiplexed visualization of dynamic signaling networks using genetically encoded fluorescent protein-based biosensors.

Authors:  Charlene Depry; Sohum Mehta; Jin Zhang
Journal:  Pflugers Arch       Date:  2012-11-09       Impact factor: 3.657

9.  A genetically encoded, fluorescent indicator for cyclic AMP in living cells.

Authors:  M Zaccolo; F De Giorgi; C Y Cho; L Feng; T Knapp; P A Negulescu; S S Taylor; R Y Tsien; T Pozzan
Journal:  Nat Cell Biol       Date:  2000-01       Impact factor: 28.824

10.  Activation of CaMKII in single dendritic spines during long-term potentiation.

Authors:  Seok-Jin R Lee; Yasmin Escobedo-Lozoya; Erzsebet M Szatmari; Ryohei Yasuda
Journal:  Nature       Date:  2009-03-19       Impact factor: 49.962

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  29 in total

1.  Filopodia Conduct Target Selection in Cortical Neurons Using Differences in Signal Kinetics of a Single Kinase.

Authors:  Yu-Ting Mao; Julia X Zhu; Kenji Hanamura; Giuliano Iurilli; Sandeep Robert Datta; Matthew B Dalva
Journal:  Neuron       Date:  2018-05-03       Impact factor: 17.173

2.  Multidimensional Control of Cas9 by Evolved RNA Polymerase-Based Biosensors.

Authors:  Jinyue Pu; Kaitlin Kentala; Bryan C Dickinson
Journal:  ACS Chem Biol       Date:  2017-08-22       Impact factor: 5.100

Review 3.  Genetically Encodable Fluorescent and Bioluminescent Biosensors Light Up Signaling Networks.

Authors:  Xin Zhou; Sohum Mehta; Jin Zhang
Journal:  Trends Biochem Sci       Date:  2020-07-10       Impact factor: 13.807

4.  A simple approach for measuring FRET in fluorescent biosensors using two-photon microscopy.

Authors:  Richard N Day; Wen Tao; Kenneth W Dunn
Journal:  Nat Protoc       Date:  2016-09-29       Impact factor: 13.491

5.  Visualizing Dynamics of Cell Signaling In Vivo with a Phase Separation-Based Kinase Reporter.

Authors:  Qiang Zhang; Hai Huang; Luqing Zhang; Roland Wu; Chan-I Chung; Shao-Qing Zhang; Joaquim Torra; Antonino Schepis; Shaun R Coughlin; Thomas B Kornberg; Xiaokun Shu
Journal:  Mol Cell       Date:  2018-01-04       Impact factor: 17.970

6.  Live-cell measurements of kinase activity in single cells using translocation reporters.

Authors:  Takamasa Kudo; Stevan Jeknić; Derek N Macklin; Sajia Akhter; Jacob J Hughey; Sergi Regot; Markus W Covert
Journal:  Nat Protoc       Date:  2017-12-21       Impact factor: 13.491

7.  Spectral imaging of FRET-based sensors reveals sustained cAMP gradients in three spatial dimensions.

Authors:  Naga S Annamdevula; Rachel Sweat; John R Griswold; Kenny Trinh; Chase Hoffman; Savannah West; Joshua Deal; Andrea L Britain; Kees Jalink; Thomas C Rich; Silas J Leavesley
Journal:  Cytometry A       Date:  2018-09-03       Impact factor: 4.355

8.  Temporal Analysis of PP2A Phosphatase Activity During Insulin Stimulation Using a Direct Activity Probe.

Authors:  Jon R Beck; Tiffany Truong; Cliff I Stains
Journal:  ACS Chem Biol       Date:  2016-11-07       Impact factor: 5.100

9.  A real-time, click chemistry imaging approach reveals stimulus-specific subcellular locations of phospholipase D activity.

Authors:  Dongjun Liang; Kane Wu; Reika Tei; Timothy W Bumpus; Johnny Ye; Jeremy M Baskin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-16       Impact factor: 11.205

10.  Intravital microscopy of biosensor activities and intrinsic metabolic states.

Authors:  Seth Winfree; Takashi Hato; Richard N Day
Journal:  Methods       Date:  2017-04-21       Impact factor: 3.608

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