Literature DB >> 23138230

Multiplexed visualization of dynamic signaling networks using genetically encoded fluorescent protein-based biosensors.

Charlene Depry1, Sohum Mehta, Jin Zhang.   

Abstract

Cells rely on a complex, interconnected network of signaling pathways to sense and interpret changes in their extracellular environment. The development of genetically encoded fluorescent protein (FP)-based biosensors has made it possible for researchers to directly observe and characterize the spatiotemporal dynamics of these intracellular signaling pathways in living cells. However, detailed information regarding the precise temporal and spatial relationships between intersecting pathways is often lost when individual signaling events are monitored in isolation. As the development of biosensor technology continues to advance, it is becoming increasingly feasible to image multiple FP-based biosensors concurrently, permitting greater insights into the intricate coordination of intracellular signaling networks by enabling parallel monitoring of distinct signaling events within the same cell. In this review, we discuss several strategies for multiplexed imaging of FP-based biosensors, while also underscoring some of the challenges associated with these techniques and highlighting additional avenues that could lead to further improvements in parallel monitoring of intracellular signaling events.

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Year:  2012        PMID: 23138230      PMCID: PMC3584185          DOI: 10.1007/s00424-012-1175-y

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  70 in total

1.  Monitoring agonist-induced phospholipase C activation in live cells by fluorescence resonance energy transfer.

Authors:  J van der Wal; R Habets; P Várnai; T Balla; K Jalink
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2.  Role of metallothionein in nitric oxide signaling as revealed by a green fluorescent fusion protein.

Authors:  L L Pearce; R E Gandley; W Han; K Wasserloos; M Stitt; A J Kanai; M K McLaughlin; B R Pitt; E S Levitan
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

3.  Fluorescent indicators for cyclic GMP based on cyclic GMP-dependent protein kinase Ialpha and green fluorescent proteins.

Authors:  M Sato; N Hida; T Ozawa; Y Umezawa
Journal:  Anal Chem       Date:  2000-12-15       Impact factor: 6.986

4.  Spatio-temporal images of growth-factor-induced activation of Ras and Rap1.

Authors:  N Mochizuki; S Yamashita; K Kurokawa; Y Ohba; T Nagai; A Miyawaki; M Matsuda
Journal:  Nature       Date:  2001-06-28       Impact factor: 49.962

5.  Visualization of phosphatase activity in living cells with a FRET-based calcineurin activity sensor.

Authors:  Robert H Newman; Jin Zhang
Journal:  Mol Biosyst       Date:  2008-02-14

Review 6.  Genetically encoded calcium indicators.

Authors:  Marco Mank; Oliver Griesbeck
Journal:  Chem Rev       Date:  2008-05-01       Impact factor: 60.622

7.  Fluorescent protein FRET pairs for ratiometric imaging of dual biosensors.

Authors:  Hui-wang Ai; Kristin L Hazelwood; Michael W Davidson; Robert E Campbell
Journal:  Nat Methods       Date:  2008-04-20       Impact factor: 28.547

8.  Circularly permuted green fluorescent proteins engineered to sense Ca2+.

Authors:  T Nagai; A Sawano; E S Park; A Miyawaki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-06       Impact factor: 11.205

9.  Rapid turnover rate of phosphoinositides at the front of migrating MDCK cells.

Authors:  Teruko Nishioka; Kazuhiro Aoki; Kazuhiro Hikake; Hisayoshi Yoshizaki; Etsuko Kiyokawa; Michiyuki Matsuda
Journal:  Mol Biol Cell       Date:  2008-08-06       Impact factor: 4.138

10.  A genetically encoded, fluorescent indicator for cyclic AMP in living cells.

Authors:  M Zaccolo; F De Giorgi; C Y Cho; L Feng; T Knapp; P A Negulescu; S S Taylor; R Y Tsien; T Pozzan
Journal:  Nat Cell Biol       Date:  2000-01       Impact factor: 28.824

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  14 in total

1.  Nondestructive nanostraw intracellular sampling for longitudinal cell monitoring.

Authors:  Yuhong Cao; Martin Hjort; Haodong Chen; Fikri Birey; Sergio A Leal-Ortiz; Crystal M Han; Juan G Santiago; Sergiu P Paşca; Joseph C Wu; Nicholas A Melosh
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

2.  Imaging GFP-based reporters in neurons with multiwavelength optogenetic control.

Authors:  Veena Venkatachalam; Adam E Cohen
Journal:  Biophys J       Date:  2014-10-07       Impact factor: 4.033

3.  Quantitative imaging of Rac1 activity in Dictyostelium cells with a fluorescently labelled GTPase-binding domain from DPAKa kinase.

Authors:  Maja Marinović; Marko Šoštar; Vedrana Filić; Vlatka Antolović; Igor Weber
Journal:  Histochem Cell Biol       Date:  2016-04-28       Impact factor: 4.304

Review 4.  Genetically encoded fluorescent biosensors for live-cell visualization of protein phosphorylation.

Authors:  Laurel Oldach; Jin Zhang
Journal:  Chem Biol       Date:  2014-01-30

5.  A multiplexed fluorescent assay for independent second-messenger systems: decoding GPCR activation in living cells.

Authors:  Paul H Tewson; Anne Marie Quinn; Thomas E Hughes
Journal:  J Biomol Screen       Date:  2013-04-11

6.  A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo.

Authors:  Jun Chu; Younghee Oh; Alex Sens; Niloufar Ataie; Hod Dana; John J Macklin; Tal Laviv; Erik S Welf; Kevin M Dean; Feijie Zhang; Benjamin B Kim; Clement Tran Tang; Michelle Hu; Michelle A Baird; Michael W Davidson; Mark A Kay; Reto Fiolka; Ryohei Yasuda; Douglas S Kim; Ho-Leung Ng; Michael Z Lin
Journal:  Nat Biotechnol       Date:  2016-05-30       Impact factor: 54.908

7.  Transgenic mouse lines for non-invasive ratiometric monitoring of intracellular chloride.

Authors:  Laura Batti; Marat Mukhtarov; Enrica Audero; Anton Ivanov; Rosa Chiara Paolicelli; Sandra Zurborg; Cornelius Gross; Piotr Bregestovski; Paul A Heppenstall
Journal:  Front Mol Neurosci       Date:  2013-05-21       Impact factor: 5.639

Review 8.  Retrograde labeling, transduction, and genetic targeting allow cellular analysis of corticospinal motor neurons: implications in health and disease.

Authors:  Javier H Jara; Barış Genç; Jodi L Klessner; P Hande Ozdinler
Journal:  Front Neuroanat       Date:  2014-03-26       Impact factor: 3.856

9.  Simultaneous mapping of membrane voltage and calcium in zebrafish heart in vivo reveals chamber-specific developmental transitions in ionic currents.

Authors:  Jennifer H Hou; Joel M Kralj; Adam D Douglass; Florian Engert; Adam E Cohen
Journal:  Front Physiol       Date:  2014-09-11       Impact factor: 4.566

10.  Single-color, ratiometric biosensors for detecting signaling activities in live cells.

Authors:  Brian L Ross; Brian Tenner; Michele L Markwardt; Adam Zviman; Guoli Shi; Jaclyn P Kerr; Nicole E Snell; Jennifer J McFarland; Joseph R Mauban; Christopher W Ward; Megan A Rizzo; Jin Zhang
Journal:  Elife       Date:  2018-07-03       Impact factor: 8.713

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