Literature DB >> 11592975

A high-speed atomic force microscope for studying biological macromolecules.

T Ando1, N Kodera, E Takai, D Maruyama, K Saito, A Toda.   

Abstract

The atomic force microscope (AFM) is a powerful tool for imaging individual biological molecules attached to a substrate and placed in aqueous solution. At present, however, it is limited by the speed at which it can successively record highly resolved images. We sought to increase markedly the scan speed of the AFM, so that in the future it can be used to study the dynamic behavior of biomolecules. For this purpose, we have developed a high-speed scanner, free of resonant vibrations up to 60 kHz, small cantilevers with high resonance frequencies (450-650 kHz) and small spring constants (150-280 pN/nm), an objective-lens type of deflection detection device, and several electronic devices of wide bandwidth. Integration of these various devices has produced an AFM that can capture a 100 x 100 pixel(2) image within 80 ms and therefore can generate a movie consisting of many successive images (80-ms intervals) of a sample in aqueous solution. This is demonstrated by imaging myosin V molecules moving on mica (see http://www.s.kanazawa-u.ac.jp/phys/biophys/bmv_movie.htm).

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Year:  2001        PMID: 11592975      PMCID: PMC60077          DOI: 10.1073/pnas.211400898

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

Review 1.  Molecular chaperones: containers and surfaces for folding, stabilising or unfolding proteins.

Authors:  H Saibil
Journal:  Curr Opin Struct Biol       Date:  2000-04       Impact factor: 6.809

2.  Probing protein-protein interactions in real time.

Authors:  M B Viani; L I Pietrasanta; J B Thompson; A Chand; I C Gebeshuber; J H Kindt; M Richter; H G Hansma; P K Hansma
Journal:  Nat Struct Biol       Date:  2000-08

3.  Direct observation of processive movement by individual myosin V molecules.

Authors:  T Sakamoto; I Amitani; E Yokota; T Ando
Journal:  Biochem Biophys Res Commun       Date:  2000-06-07       Impact factor: 3.575

4.  Atomic force microscope.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-03-03       Impact factor: 9.161

Review 5.  Scanning force microscopy under aqueous solutions.

Authors:  C Bustamante; C Rivetti; D J Keller
Journal:  Curr Opin Struct Biol       Date:  1997-10       Impact factor: 6.809

6.  Escherichia coli RNA polymerase activity observed using atomic force microscopy.

Authors:  S Kasas; N H Thomson; B L Smith; H G Hansma; X Zhu; M Guthold; C Bustamante; E T Kool; M Kashlev; P K Hansma
Journal:  Biochemistry       Date:  1997-01-21       Impact factor: 3.162

7.  Imaging crystals, polymers, and processes in water with the atomic force microscope.

Authors:  B Drake; C B Prater; A L Weisenhorn; S A Gould; T R Albrecht; C F Quate; D S Cannell; H G Hansma; P K Hansma
Journal:  Science       Date:  1989-03-24       Impact factor: 47.728

8.  Following the assembly of RNA polymerase-DNA complexes in aqueous solutions with the scanning force microscope.

Authors:  M Guthold; M Bezanilla; D A Erie; B Jenkins; H G Hansma; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-20       Impact factor: 11.205

9.  Brain myosin-V is a two-headed unconventional myosin with motor activity.

Authors:  R E Cheney; M K O'Shea; J E Heuser; M V Coelho; J S Wolenski; E M Espreafico; P Forscher; R E Larson; M S Mooseker
Journal:  Cell       Date:  1993-10-08       Impact factor: 41.582

10.  Direct observation of single kinesin molecules moving along microtubules.

Authors:  R D Vale; T Funatsu; D W Pierce; L Romberg; Y Harada; T Yanagida
Journal:  Nature       Date:  1996-04-04       Impact factor: 49.962

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  172 in total

1.  Visual analysis of concerted cleavage by type IIF restriction enzyme SfiI in subsecond time region.

Authors:  Yuki Suzuki; Jamie L Gilmore; Shige H Yoshimura; Robert M Henderson; Yuri L Lyubchenko; Kunio Takeyasu
Journal:  Biophys J       Date:  2011-12-20       Impact factor: 4.033

2.  Characterization of the motion of membrane proteins using high-speed atomic force microscopy.

Authors:  Ignacio Casuso; Jonathan Khao; Mohamed Chami; Perrine Paul-Gilloteaux; Mohamed Husain; Jean-Pierre Duneau; Henning Stahlberg; James N Sturgis; Simon Scheuring
Journal:  Nat Nanotechnol       Date:  2012-07-08       Impact factor: 39.213

3.  Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy.

Authors:  Takayuki Uchihashi; Noriyuki Kodera; Toshio Ando
Journal:  Nat Protoc       Date:  2012-05-24       Impact factor: 13.491

4.  Single molecule transcription profiling with AFM.

Authors:  Jason Reed; Bud Mishra; Bede Pittenger; Sergei Magonov; Joshua Troke; Michael A Teitell; James K Gimzewski
Journal:  Nanotechnology       Date:  2007-05-09       Impact factor: 3.874

5.  Visualization and structural analysis of the bacterial magnetic organelle magnetosome using atomic force microscopy.

Authors:  Daisuke Yamamoto; Azuma Taoka; Takayuki Uchihashi; Hideaki Sasaki; Hiroki Watanabe; Toshio Ando; Yoshihiro Fukumori
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

Review 6.  Sampling protein form and function with the atomic force microscope.

Authors:  Marian Baclayon; Wouter H Roos; Gijs J L Wuite
Journal:  Mol Cell Proteomics       Date:  2010-06-18       Impact factor: 5.911

7.  Video imaging of walking myosin V by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

8.  Experimental evidence for membrane-mediated protein-protein interaction.

Authors:  Ignacio Casuso; Pierre Sens; Felix Rico; Simon Scheuring
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

9.  High speed bio-AFM reveals motion of membrane proteins driven by hydrophobic mismatch with nm precision in label-free fashion.

Authors:  Peter Hinterdorfer
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

10.  Differentiating amino acid residues and side chain orientations in peptides using scanning tunneling microscopy.

Authors:  Shelley A Claridge; John C Thomas; Miles A Silverman; Jeffrey J Schwartz; Yanlian Yang; Chen Wang; Paul S Weiss
Journal:  J Am Chem Soc       Date:  2013-12-02       Impact factor: 15.419

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