Literature DB >> 24454235

1-Octylindoline-2,3-dione.

Fatima-Zahrae Qachchachi1, Youssef Kandri Rodi1, El Mokhtar Essassi2, Werner Kunz3, Lahcen El Ammari4.   

Abstract

In the title compound, C16H21NO2, the indoline ring and the two ketone O atoms are approximately coplanar, the largest deviation from the mean plane being 0.063 (2) Å. The mean plane through the fused ring system is nearly perpendicular to the mean plane passing through the 1-octyl chain [dihedral angle = 77.53 (17)°]. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2013        PMID: 24454235      PMCID: PMC3885059          DOI: 10.1107/S1600536813031383

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indoline derivatives, see: Bhrigu et al. (2010 ▶); Malhotra et al. (2011 ▶); Da Silva et al. (2001 ▶); Ramachandran (2011 ▶); Smitha et al. (2008 ▶). For the structure of a related compound, see: Mamari et al. (2010 ▶).

Experimental

Crystal data

C16H21NO2 M = 259.34 Monoclinic, a = 20.266 (4) Å b = 4.6925 (1) Å c = 15.7807 (11) Å β = 108.941 (18)° V = 1419.5 (3) Å3 Z = 4 Cu Kα radiation μ = 0.63 mm−1 T = 123 K 0.31 × 0.07 × 0.04 mm

Data collection

Oxford Diffraction SuperNova (single source at offset, Atlas) diffractometer Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2012 ▶); analytical numeric absorption correction using a multi-faceted crystal model (Clark & Reid, 1995 ▶)] T min = 0.899, T max = 0.979 13541 measured reflections 2811 independent reflections 2462 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.167 S = 1.18 2811 reflections 172 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: WinGX (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813031383/rz5095sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813031383/rz5095Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813031383/rz5095Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H21NO2F(000) = 560
Mr = 259.34Dx = 1.214 Mg m3
Monoclinic, P21/cMelting point: 317 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.5418 Å
a = 20.266 (4) ÅCell parameters from 5321 reflections
b = 4.6925 (1) Åθ = 3.0–73.5°
c = 15.7807 (11) ŵ = 0.63 mm1
β = 108.941 (18)°T = 123 K
V = 1419.5 (3) Å3Plate, orange
Z = 40.31 × 0.07 × 0.04 mm
Oxford Diffraction SuperNova (single source at offset, Atlas) diffractometer2811 independent reflections
Radiation source: SuperNova (Cu) X-ray Source2462 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 20.7092 pixels mm-1θmax = 73.7°, θmin = 4.6°
ω scansh = −24→25
Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2012); analytical numeric absorption correction using a multi-faceted crystal model (Clark & Reid, 1995)]k = −5→5
Tmin = 0.899, Tmax = 0.979l = −17→19
13541 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.167H-atom parameters constrained
S = 1.18w = 1/[σ2(Fo2) + (0.0633P)2 + 1.1901P] where P = (Fo2 + 2Fc2)/3
2811 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
O10.33354 (9)0.7667 (4)0.34657 (10)0.0397 (4)
O20.44511 (8)1.1900 (4)0.42454 (10)0.0385 (4)
N10.32574 (9)0.7836 (4)0.48939 (11)0.0272 (4)
C10.35221 (11)0.8574 (5)0.42319 (14)0.0299 (5)
C20.40999 (10)1.0835 (5)0.46468 (14)0.0288 (5)
C30.40798 (10)1.1295 (4)0.55543 (13)0.0258 (4)
C40.44509 (10)1.3124 (5)0.62281 (15)0.0296 (5)
H40.47911.43250.61480.036*
C50.43015 (11)1.3116 (5)0.70275 (14)0.0308 (5)
H50.45401.43430.74880.037*
C60.37992 (11)1.1290 (5)0.71428 (13)0.0290 (5)
H60.37101.13100.76850.035*
C70.34230 (10)0.9420 (5)0.64691 (13)0.0272 (4)
H70.30890.81960.65530.033*
C80.35685 (9)0.9471 (4)0.56786 (13)0.0241 (4)
C90.26652 (10)0.5930 (5)0.47581 (15)0.0303 (5)
H9A0.27320.48190.52980.036*
H9B0.26450.46180.42750.036*
C100.19768 (10)0.7542 (5)0.45315 (15)0.0300 (5)
H10A0.19400.88370.40390.036*
H10B0.19760.86740.50450.036*
C110.13437 (10)0.5572 (5)0.42731 (15)0.0305 (5)
H11A0.13820.42620.47630.037*
H11B0.13410.44550.37540.037*
C120.06565 (10)0.7207 (5)0.40574 (15)0.0311 (5)
H12A0.06510.82300.45890.037*
H12B0.06350.86050.35970.037*
C130.00107 (10)0.5314 (5)0.37394 (15)0.0317 (5)
H13A0.00140.42980.32050.038*
H13B0.00310.39120.41990.038*
C14−0.06690 (11)0.6980 (5)0.35310 (15)0.0327 (5)
H14A−0.06830.84120.30820.039*
H14B−0.06750.79620.40690.039*
C15−0.13189 (11)0.5123 (5)0.31923 (16)0.0358 (5)
H15A−0.13060.36830.36380.043*
H15B−0.13170.41540.26500.043*
C16−0.19929 (12)0.6838 (6)0.29952 (18)0.0429 (6)
H16A−0.23860.55780.27880.064*
H16B−0.20150.82340.25420.064*
H16C−0.20010.77780.35320.064*
U11U22U33U12U13U23
O10.0396 (9)0.0494 (10)0.0293 (8)0.0081 (7)0.0102 (7)−0.0051 (7)
O20.0303 (8)0.0559 (11)0.0335 (8)0.0040 (7)0.0160 (7)0.0132 (7)
N10.0222 (8)0.0314 (9)0.0271 (9)0.0000 (7)0.0067 (7)−0.0028 (7)
C10.0265 (10)0.0372 (12)0.0262 (10)0.0098 (8)0.0087 (8)0.0014 (8)
C20.0224 (9)0.0349 (11)0.0297 (10)0.0088 (8)0.0092 (8)0.0086 (9)
C30.0225 (9)0.0285 (10)0.0275 (10)0.0050 (7)0.0096 (8)0.0072 (8)
C40.0207 (9)0.0307 (11)0.0364 (11)−0.0008 (8)0.0078 (8)0.0049 (9)
C50.0267 (10)0.0319 (11)0.0312 (11)0.0000 (8)0.0059 (8)−0.0013 (8)
C60.0275 (10)0.0353 (11)0.0243 (10)0.0047 (8)0.0084 (8)0.0026 (8)
C70.0240 (9)0.0306 (11)0.0286 (10)0.0001 (8)0.0107 (8)0.0031 (8)
C80.0188 (9)0.0257 (10)0.0263 (9)0.0040 (7)0.0053 (7)0.0011 (8)
C90.0250 (10)0.0284 (11)0.0350 (11)−0.0012 (8)0.0064 (8)−0.0031 (8)
C100.0247 (10)0.0299 (11)0.0340 (11)0.0014 (8)0.0074 (8)−0.0014 (8)
C110.0238 (10)0.0311 (11)0.0345 (11)0.0004 (8)0.0063 (8)−0.0026 (9)
C120.0236 (10)0.0324 (11)0.0353 (11)0.0011 (8)0.0067 (8)−0.0013 (9)
C130.0253 (10)0.0337 (12)0.0347 (11)0.0000 (8)0.0079 (8)−0.0023 (9)
C140.0256 (11)0.0365 (12)0.0344 (11)0.0004 (9)0.0075 (9)−0.0005 (9)
C150.0271 (11)0.0404 (13)0.0388 (12)−0.0014 (9)0.0092 (9)−0.0039 (10)
C160.0244 (11)0.0546 (15)0.0462 (14)−0.0006 (10)0.0069 (10)−0.0003 (12)
O1—C11.220 (3)C10—H10A0.9700
O2—C21.204 (3)C10—H10B0.9700
N1—C11.365 (3)C11—C121.528 (3)
N1—C81.419 (3)C11—H11A0.9700
N1—C91.456 (3)C11—H11B0.9700
C1—C21.558 (3)C12—C131.526 (3)
C2—C31.462 (3)C12—H12A0.9700
C3—C41.383 (3)C12—H12B0.9700
C3—C81.406 (3)C13—C141.524 (3)
C4—C51.390 (3)C13—H13A0.9700
C4—H40.9300C13—H13B0.9700
C5—C61.387 (3)C14—C151.524 (3)
C5—H50.9300C14—H14A0.9700
C6—C71.398 (3)C14—H14B0.9700
C6—H60.9300C15—C161.528 (3)
C7—C81.372 (3)C15—H15A0.9700
C7—H70.9300C15—H15B0.9700
C9—C101.524 (3)C16—H16A0.9600
C9—H9A0.9700C16—H16B0.9600
C9—H9B0.9700C16—H16C0.9600
C10—C111.526 (3)
C1—N1—C8110.93 (17)H10A—C10—H10B107.8
C1—N1—C9123.59 (18)C10—C11—C12112.44 (18)
C8—N1—C9124.91 (17)C10—C11—H11A109.1
O1—C1—N1126.7 (2)C12—C11—H11A109.1
O1—C1—C2127.1 (2)C10—C11—H11B109.1
N1—C1—C2106.24 (17)C12—C11—H11B109.1
O2—C2—C3131.6 (2)H11A—C11—H11B107.8
O2—C2—C1123.6 (2)C13—C12—C11113.79 (18)
C3—C2—C1104.83 (16)C13—C12—H12A108.8
C4—C3—C8120.78 (18)C11—C12—H12A108.8
C4—C3—C2131.56 (19)C13—C12—H12B108.8
C8—C3—C2107.65 (18)C11—C12—H12B108.8
C3—C4—C5118.16 (19)H12A—C12—H12B107.7
C3—C4—H4120.9C14—C13—C12113.04 (18)
C5—C4—H4120.9C14—C13—H13A109.0
C6—C5—C4120.4 (2)C12—C13—H13A109.0
C6—C5—H5119.8C14—C13—H13B109.0
C4—C5—H5119.8C12—C13—H13B109.0
C5—C6—C7122.01 (19)H13A—C13—H13B107.8
C5—C6—H6119.0C13—C14—C15113.60 (19)
C7—C6—H6119.0C13—C14—H14A108.8
C8—C7—C6117.09 (19)C15—C14—H14A108.8
C8—C7—H7121.5C13—C14—H14B108.8
C6—C7—H7121.5C15—C14—H14B108.8
C7—C8—C3121.54 (19)H14A—C14—H14B107.7
C7—C8—N1128.20 (18)C14—C15—C16112.6 (2)
C3—C8—N1110.25 (17)C14—C15—H15A109.1
N1—C9—C10112.20 (17)C16—C15—H15A109.1
N1—C9—H9A109.2C14—C15—H15B109.1
C10—C9—H9A109.2C16—C15—H15B109.1
N1—C9—H9B109.2H15A—C15—H15B107.8
C10—C9—H9B109.2C15—C16—H16A109.5
H9A—C9—H9B107.9C15—C16—H16B109.5
C9—C10—C11112.85 (17)H16A—C16—H16B109.5
C9—C10—H10A109.0C15—C16—H16C109.5
C11—C10—H10A109.0H16A—C16—H16C109.5
C9—C10—H10B109.0H16B—C16—H16C109.5
C11—C10—H10B109.0
C8—N1—C1—O1−175.8 (2)C6—C7—C8—N1−179.05 (19)
C9—N1—C1—O1−4.1 (3)C4—C3—C8—C7−0.5 (3)
C8—N1—C1—C23.3 (2)C2—C3—C8—C7−179.61 (18)
C9—N1—C1—C2174.96 (17)C4—C3—C8—N1179.39 (18)
O1—C1—C2—O2−2.5 (3)C2—C3—C8—N10.3 (2)
N1—C1—C2—O2178.42 (19)C1—N1—C8—C7177.49 (19)
O1—C1—C2—C3176.1 (2)C9—N1—C8—C75.9 (3)
N1—C1—C2—C3−3.0 (2)C1—N1—C8—C3−2.4 (2)
O2—C2—C3—C41.1 (4)C9—N1—C8—C3−173.93 (18)
C1—C2—C3—C4−177.4 (2)C1—N1—C9—C10−93.2 (2)
O2—C2—C3—C8−180.0 (2)C8—N1—C9—C1077.3 (2)
C1—C2—C3—C81.6 (2)N1—C9—C10—C11172.83 (17)
C8—C3—C4—C5−0.3 (3)C9—C10—C11—C12179.35 (18)
C2—C3—C4—C5178.5 (2)C10—C11—C12—C13176.35 (18)
C3—C4—C5—C60.8 (3)C11—C12—C13—C14179.79 (18)
C4—C5—C6—C7−0.5 (3)C12—C13—C14—C15178.69 (18)
C5—C6—C7—C8−0.3 (3)C13—C14—C15—C16179.56 (19)
C6—C7—C8—C30.8 (3)
D—H···AD—HH···AD···AD—H···A
C6—H6···O1i0.932.493.156 (3)129
C6—H6···O2ii0.932.573.260 (3)131
C4—H4···O2iii0.932.553.470 (3)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6⋯O1i 0.932.493.156 (3)129
C6—H6⋯O2ii 0.932.573.260 (3)131
C4—H4⋯O2iii 0.932.553.470 (3)170

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-31

3.  1-(Prop-2-yn-yl)indoline-2,3-dione.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-26

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-18

5.  Crystal structure, DFT study and Hirshfeld surface analysis of 1-nonyl-2,3-di-hydro-1H-indole-2,3-dione.

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