Literature DB >> 24765047

3-(2,3-Dioxoindolin-1-yl)propane-nitrile.

Fatima-Zahrae Qachchachi1, Youssef Kandri Rodi1, El Mokhtar Essassi2, Michael Bodensteiner3, Lahcen El Ammari4.   

Abstract

The asymmetric unit of the title compound, C11H8N2O2, contains two independent mol-ecules (A and B). Each mol-ecule is build up from fused five- and six-membered rings with the former linked to a cyano-ethyl group. The indoline ring and two carbonyl O atoms of each mol-ecule are nearly coplanar, with the largest deviations from the mean planes being 0.0198 (9) (mol-ecule A) and 0.0902 (9) Å (mol-ecule B), each by a carbonyl O atom. The fused ring system is nearly perpendicular to the mean plane passing through the cyano-ethyl chains, as indicated by the dihedral angles between them of 69.72 (9) (mol-ecule A) and 69.15 (9)° (mol-ecule B). In the crystal, mol-ecules are linked by C-H⋯O and π-π [inter-centroid distance between inversion-related indoline (A) rings = 3.6804 (7) Å] inter-actions into a double layer that stacks along the a-axis direction.

Entities:  

Year:  2014        PMID: 24765047      PMCID: PMC3998493          DOI: 10.1107/S1600536814003985

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activity of indoline derivatives, see: Bhrigu et al. (2010 ▶); Ramachandran (2011 ▶); Smitha et al. (2008 ▶). For similar structures, see: Qachchachi et al. (2013 ▶, 2014 ▶).

Experimental

Crystal data

C11H8N2O2 M = 200.19 Triclinic, a = 7.1967 (2) Å b = 9.9909 (3) Å c = 13.5534 (5) Å α = 77.508 (3)° β = 81.551 (3)° γ = 77.717 (3)° V = 924.44 (5) Å3 Z = 4 Cu Kα radiation μ = 0.84 mm−1 T = 123 K 0.26 × 0.17 × 0.12 mm

Data collection

Agilent SuperNova (Single source at offset, Atlas) diffractometer Absorption correction: analytical (Clark & Reid, 1995 ▶) T min = 0.827, T max = 0.917 5751 measured reflections 3546 independent reflections 3292 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.086 S = 1.07 3546 reflections 271 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis PRO (Agilent, 2013 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814003985/tk5297sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814003985/tk5297Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814003985/tk5297Isup3.cml CCDC reference: 988036 Additional supporting information: crystallographic information; 3D view; checkCIF report
C11H8N2O2Z = 4
Mr = 200.19F(000) = 416
Triclinic, P1Dx = 1.438 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 7.1967 (2) ÅCell parameters from 4004 reflections
b = 9.9909 (3) Åθ = 4.6–73.3°
c = 13.5534 (5) ŵ = 0.84 mm1
α = 77.508 (3)°T = 123 K
β = 81.551 (3)°Plate, orange
γ = 77.717 (3)°0.26 × 0.17 × 0.12 mm
V = 924.44 (5) Å3
Agilent SuperNova (Single source at offset, Atlas) diffractometer3546 independent reflections
Radiation source: SuperNova (Cu) X-ray Source3292 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.013
Detector resolution: 10.3546 pixels mm-1θmax = 73.7°, θmin = 4.6°
ω scansh = −8→8
Absorption correction: analytical (Clark & Reid, 1995)k = −12→9
Tmin = 0.827, Tmax = 0.917l = −16→16
5751 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0448P)2 + 0.2333P] where P = (Fo2 + 2Fc2)/3
3546 reflections(Δ/σ)max = 0.001
271 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.35182 (15)0.75842 (11)1.04434 (8)0.0189 (2)
C20.27845 (15)0.61738 (11)1.07606 (8)0.0193 (2)
C30.27526 (15)0.57304 (11)0.98035 (8)0.0181 (2)
C40.33583 (14)0.67561 (11)0.90158 (8)0.0171 (2)
C50.34919 (16)0.66466 (11)0.80081 (8)0.0196 (2)
H50.39140.73400.74750.023*
C60.29746 (16)0.54636 (11)0.78129 (9)0.0213 (2)
H60.30440.53570.71280.026*
C70.23621 (16)0.44382 (11)0.85865 (9)0.0218 (2)
H70.20150.36520.84230.026*
C80.22547 (15)0.45570 (11)0.95987 (9)0.0201 (2)
H80.18530.38571.01330.024*
C90.44795 (16)0.90577 (11)0.87921 (8)0.0210 (2)
H9A0.52980.87840.81870.025*
H9B0.52780.93900.91890.025*
C100.28577 (18)1.02563 (12)0.84414 (9)0.0253 (2)
H10A0.34031.09760.79270.030*
H10B0.19740.98970.81130.030*
C110.17723 (17)1.09045 (11)0.92779 (9)0.0241 (2)
C120.35805 (16)0.79086 (12)1.50595 (9)0.0231 (2)
C130.30355 (17)0.93949 (12)1.53235 (9)0.0232 (2)
C140.22133 (16)1.02896 (12)1.44313 (9)0.0220 (2)
C150.22224 (15)0.94421 (12)1.37283 (8)0.0204 (2)
C160.15683 (16)1.00021 (12)1.27902 (9)0.0232 (2)
H160.15500.94301.23170.028*
C170.09340 (17)1.14485 (13)1.25670 (9)0.0265 (3)
H170.04771.18611.19270.032*
C180.09507 (18)1.23038 (13)1.32516 (10)0.0285 (3)
H180.05221.32831.30720.034*
C190.15933 (17)1.17260 (13)1.41961 (9)0.0262 (3)
H190.16091.22981.46700.031*
C200.35533 (17)0.68910 (12)1.35580 (9)0.0233 (2)
H20A0.49070.64541.36370.028*
H20B0.34520.72771.28270.028*
C210.23180 (18)0.57728 (12)1.39112 (9)0.0264 (3)
H21A0.28740.49721.35720.032*
H21B0.23450.54361.46530.032*
C220.03284 (19)0.62732 (13)1.36936 (9)0.0283 (3)
N10.38031 (13)0.78390 (9)0.94098 (7)0.01830 (19)
N20.09333 (16)1.14251 (11)0.99259 (9)0.0312 (2)
N30.30023 (14)0.80320 (10)1.41232 (7)0.0216 (2)
N4−0.12343 (17)0.66540 (14)1.35365 (10)0.0410 (3)
O10.37857 (12)0.82987 (8)1.10106 (6)0.02410 (18)
O20.23689 (12)0.56414 (9)1.16318 (6)0.02605 (19)
O30.33463 (13)0.96621 (9)1.61077 (6)0.0300 (2)
O40.43958 (13)0.68559 (9)1.55714 (6)0.0300 (2)
U11U22U33U12U13U23
C10.0187 (5)0.0186 (5)0.0195 (5)−0.0013 (4)−0.0037 (4)−0.0046 (4)
C20.0190 (5)0.0186 (5)0.0202 (5)−0.0023 (4)−0.0033 (4)−0.0042 (4)
C30.0168 (5)0.0180 (5)0.0191 (5)−0.0017 (4)−0.0027 (4)−0.0038 (4)
C40.0159 (5)0.0152 (5)0.0207 (5)−0.0010 (4)−0.0035 (4)−0.0052 (4)
C50.0221 (5)0.0176 (5)0.0187 (5)−0.0024 (4)−0.0028 (4)−0.0037 (4)
C60.0239 (5)0.0209 (5)0.0202 (5)−0.0003 (4)−0.0054 (4)−0.0079 (4)
C70.0230 (5)0.0171 (5)0.0278 (6)−0.0029 (4)−0.0061 (4)−0.0081 (4)
C80.0194 (5)0.0167 (5)0.0238 (5)−0.0030 (4)−0.0027 (4)−0.0033 (4)
C90.0238 (5)0.0188 (5)0.0221 (5)−0.0083 (4)0.0004 (4)−0.0052 (4)
C100.0350 (6)0.0189 (5)0.0230 (6)−0.0065 (5)−0.0061 (5)−0.0029 (4)
C110.0257 (6)0.0150 (5)0.0318 (6)−0.0062 (4)−0.0057 (5)−0.0011 (5)
C120.0247 (6)0.0265 (6)0.0187 (5)−0.0073 (4)0.0000 (4)−0.0044 (4)
C130.0240 (6)0.0278 (6)0.0195 (5)−0.0086 (4)0.0007 (4)−0.0064 (4)
C140.0207 (5)0.0262 (6)0.0205 (5)−0.0072 (4)0.0005 (4)−0.0065 (4)
C150.0173 (5)0.0233 (5)0.0210 (5)−0.0057 (4)0.0011 (4)−0.0053 (4)
C160.0199 (5)0.0300 (6)0.0204 (5)−0.0040 (4)−0.0014 (4)−0.0072 (4)
C170.0213 (6)0.0315 (6)0.0242 (6)−0.0020 (5)−0.0034 (4)−0.0024 (5)
C180.0253 (6)0.0238 (6)0.0347 (7)−0.0011 (5)−0.0042 (5)−0.0049 (5)
C190.0247 (6)0.0264 (6)0.0293 (6)−0.0054 (4)−0.0007 (5)−0.0103 (5)
C200.0259 (6)0.0241 (6)0.0208 (5)−0.0034 (4)−0.0011 (4)−0.0083 (4)
C210.0359 (7)0.0226 (6)0.0217 (6)−0.0065 (5)−0.0048 (5)−0.0042 (4)
C220.0360 (7)0.0307 (6)0.0232 (6)−0.0137 (5)0.0018 (5)−0.0117 (5)
N10.0218 (4)0.0158 (4)0.0187 (4)−0.0050 (3)−0.0024 (3)−0.0048 (3)
N20.0303 (5)0.0220 (5)0.0406 (6)−0.0057 (4)0.0009 (5)−0.0070 (5)
N30.0259 (5)0.0222 (5)0.0178 (4)−0.0052 (4)−0.0020 (4)−0.0056 (4)
N40.0322 (7)0.0549 (8)0.0445 (7)−0.0133 (5)−0.0001 (5)−0.0254 (6)
O10.0306 (4)0.0231 (4)0.0219 (4)−0.0061 (3)−0.0050 (3)−0.0089 (3)
O20.0318 (4)0.0277 (4)0.0181 (4)−0.0077 (3)−0.0017 (3)−0.0019 (3)
O30.0380 (5)0.0351 (5)0.0205 (4)−0.0101 (4)−0.0033 (4)−0.0095 (4)
O40.0379 (5)0.0287 (4)0.0216 (4)−0.0030 (4)−0.0056 (4)−0.0026 (3)
C1—O11.2153 (14)C12—O41.2137 (15)
C1—N11.3612 (14)C12—N31.3655 (15)
C1—C21.5610 (15)C12—C131.5581 (16)
C2—O21.2079 (14)C13—O31.2120 (15)
C2—C31.4633 (15)C13—C141.4591 (17)
C3—C81.3886 (15)C14—C191.3898 (17)
C3—C41.4000 (15)C14—C151.4035 (16)
C4—C51.3812 (15)C15—C161.3811 (16)
C4—N11.4163 (13)C15—N31.4184 (15)
C5—C61.3990 (15)C16—C171.3997 (17)
C5—H50.9500C16—H160.9500
C6—C71.3910 (16)C17—C181.3935 (18)
C6—H60.9500C17—H170.9500
C7—C81.3919 (16)C18—C191.3880 (18)
C7—H70.9500C18—H180.9500
C8—H80.9500C19—H190.9500
C9—N11.4533 (14)C20—N31.4627 (14)
C9—C101.5311 (16)C20—C211.5277 (16)
C9—H9A0.9900C20—H20A0.9900
C9—H9B0.9900C20—H20B0.9900
C10—C111.4686 (17)C21—C221.4638 (19)
C10—H10A0.9900C21—H21A0.9900
C10—H10B0.9900C21—H21B0.9900
C11—N21.1465 (17)C22—N41.1437 (18)
O1—C1—N1127.39 (10)O3—C13—C14131.27 (11)
O1—C1—C2126.58 (10)O3—C13—C12123.77 (11)
N1—C1—C2106.03 (9)C14—C13—C12104.90 (9)
O2—C2—C3131.42 (10)C19—C14—C15121.09 (11)
O2—C2—C1123.65 (10)C19—C14—C13131.24 (11)
C3—C2—C1104.94 (9)C15—C14—C13107.57 (10)
C8—C3—C4120.97 (10)C16—C15—C14121.14 (11)
C8—C3—C2131.70 (10)C16—C15—N3128.32 (10)
C4—C3—C2107.33 (9)C14—C15—N3110.52 (10)
C5—C4—C3121.79 (10)C15—C16—C17117.12 (11)
C5—C4—N1127.51 (10)C15—C16—H16121.4
C3—C4—N1110.69 (9)C17—C16—H16121.4
C4—C5—C6116.62 (10)C18—C17—C16122.25 (11)
C4—C5—H5121.7C18—C17—H17118.9
C6—C5—H5121.7C16—C17—H17118.9
C7—C6—C5122.30 (10)C19—C18—C17120.05 (11)
C7—C6—H6118.9C19—C18—H18120.0
C5—C6—H6118.9C17—C18—H18120.0
C6—C7—C8120.37 (10)C18—C19—C14118.32 (11)
C6—C7—H7119.8C18—C19—H19120.8
C8—C7—H7119.8C14—C19—H19120.8
C3—C8—C7117.95 (10)N3—C20—C21112.93 (9)
C3—C8—H8121.0N3—C20—H20A109.0
C7—C8—H8121.0C21—C20—H20A109.0
N1—C9—C10113.21 (9)N3—C20—H20B109.0
N1—C9—H9A108.9C21—C20—H20B109.0
C10—C9—H9A108.9H20A—C20—H20B107.8
N1—C9—H9B108.9C22—C21—C20113.17 (10)
C10—C9—H9B108.9C22—C21—H21A108.9
H9A—C9—H9B107.7C20—C21—H21A108.9
C11—C10—C9112.92 (10)C22—C21—H21B108.9
C11—C10—H10A109.0C20—C21—H21B108.9
C9—C10—H10A109.0H21A—C21—H21B107.8
C11—C10—H10B109.0N4—C22—C21179.04 (15)
C9—C10—H10B109.0C1—N1—C4111.00 (9)
H10A—C10—H10B107.8C1—N1—C9124.54 (9)
N2—C11—C10179.16 (13)C4—N1—C9124.46 (9)
O4—C12—N3126.70 (11)C12—N3—C15110.66 (9)
O4—C12—C13127.01 (10)C12—N3—C20121.49 (10)
N3—C12—C13106.28 (10)C15—N3—C20126.46 (9)
O1—C1—C2—O21.10 (18)C19—C14—C15—N3177.06 (10)
N1—C1—C2—O2−179.24 (10)C13—C14—C15—N30.37 (13)
O1—C1—C2—C3−178.80 (11)C14—C15—C16—C171.18 (16)
N1—C1—C2—C30.85 (11)N3—C15—C16—C17−177.39 (11)
O2—C2—C3—C8−0.7 (2)C15—C16—C17—C180.00 (17)
C1—C2—C3—C8179.16 (11)C16—C17—C18—C19−0.66 (19)
O2—C2—C3—C4179.23 (12)C17—C18—C19—C140.14 (18)
C1—C2—C3—C4−0.87 (11)C15—C14—C19—C181.04 (18)
C8—C3—C4—C5−0.18 (16)C13—C14—C19—C18176.84 (12)
C2—C3—C4—C5179.85 (10)N3—C20—C21—C2266.72 (13)
C8—C3—C4—N1−179.42 (9)O1—C1—N1—C4179.14 (11)
C2—C3—C4—N10.61 (12)C2—C1—N1—C4−0.51 (11)
C3—C4—C5—C60.55 (16)O1—C1—N1—C9−0.68 (18)
N1—C4—C5—C6179.66 (10)C2—C1—N1—C9179.67 (9)
C4—C5—C6—C7−0.27 (16)C5—C4—N1—C1−179.22 (10)
C5—C6—C7—C8−0.40 (17)C3—C4—N1—C1−0.04 (12)
C4—C3—C8—C7−0.50 (16)C5—C4—N1—C90.60 (17)
C2—C3—C8—C7179.47 (11)C3—C4—N1—C9179.78 (9)
C6—C7—C8—C30.77 (16)C10—C9—N1—C1−93.32 (12)
N1—C9—C10—C1169.07 (12)C10—C9—N1—C486.88 (12)
O4—C12—C13—O3−1.59 (19)O4—C12—N3—C15−175.78 (11)
N3—C12—C13—O3179.97 (11)C13—C12—N3—C152.67 (12)
O4—C12—C13—C14176.08 (12)O4—C12—N3—C20−8.40 (18)
N3—C12—C13—C14−2.37 (12)C13—C12—N3—C20170.05 (9)
O3—C13—C14—C192.4 (2)C16—C15—N3—C12176.66 (11)
C12—C13—C14—C19−175.05 (12)C14—C15—N3—C12−2.04 (13)
O3—C13—C14—C15178.60 (12)C16—C15—N3—C2010.05 (19)
C12—C13—C14—C151.18 (12)C14—C15—N3—C20−168.64 (10)
C19—C14—C15—C16−1.74 (17)C21—C20—N3—C1280.57 (13)
C13—C14—C15—C16−178.43 (10)C21—C20—N3—C15−114.16 (12)
D—H···AD—HH···AD···AD—H···A
C16—H16···O10.952.503.2787 (14)139
C20—H20B···O10.992.453.4287 (14)170
C6—H6···O4i0.952.513.1740 (14)127
C5—H5···O3i0.952.633.5085 (14)153
C9—H9B···O1ii0.992.493.2269 (13)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C16—H16⋯O10.952.503.2787 (14)139
C20—H20B⋯O10.992.453.4287 (14)170
C6—H6⋯O4i 0.952.513.1740 (14)127
C5—H5⋯O3i 0.952.633.5085 (14)153
C9—H9B⋯O1ii 0.992.493.2269 (13)131

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Octylindoline-2,3-dione.

Authors:  Fatima-Zahrae Qachchachi; Youssef Kandri Rodi; El Mokhtar Essassi; Werner Kunz; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-23
  2 in total
  2 in total

1.  1-[(1-Benzyl-1H-1,2,3-triazol-4-yl)meth-yl]indoline-2,3-dione.

Authors:  Fatima-Zahrae Qachchachi; Youssef Kandri Rodi; El Mokhtar Essassi; Michael Bodensteiner; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-18

2.  Crystal structure, DFT study and Hirshfeld surface analysis of 1-nonyl-2,3-di-hydro-1H-indole-2,3-dione.

Authors:  Ibtissam Rayni; Youness El Bakri; Chin-Hung Lai; Jihad Sebhaoui; El Mokhtar Essassi; Joel T Mague
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-07-12
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.