| Literature DB >> 31417780 |
Ibtissam Rayni1, Youness El Bakri2, Chin-Hung Lai3,4, Jihad Sebhaoui1, El Mokhtar Essassi1, Joel T Mague5.
Abstract
In the title mol-ecule, C17H23NO2, theEntities:
Keywords: crystal structure; dihydroindoledione; hydrogen bond; micelle; π-stacking
Year: 2019 PMID: 31417780 PMCID: PMC6690466 DOI: 10.1107/S2056989019009691
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The title molecule with the labelling scheme and 50% probability ellipsoids.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C2—H2⋯O2i | 0.992 (13) | 2.412 (13) | 3.3737 (13) | 163.3 (10) |
| C3—H3⋯O1ii | 0.997 (14) | 2.454 (15) | 3.2734 (14) | 139.0 (11) |
| C9—H9 | 0.994 (13) | 2.546 (13) | 3.5012 (13) | 161.0 (10) |
| C17—H17 | 0.98 (2) | 2.49 (2) | 3.3941 (17) | 153.3 (15) |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2Detail of the intermolecular interactions. C—H⋯O hydrogen bonds and π-stacking interactions are shown, respectively, by black and orange dashed lines. H atoms not involved in hydrogen bonds are omitted for clarity.
Figure 3Packing viewed along the b-axis direction with intermolecular interactions depicted as in Fig. 2 ▸. H atoms not involved in hydrogen bonds are omitted for clarity.
Figure 4The B3LYP-optimized geometry of the title compound (bond lengths in Å, bond angles in °; carbon in gray, nitrogen in blue, oxygen in red and hydrogen in white). please improve resolution
The B3LYP-optimized and X-ray structural parameters (Å, °) for the title compound
| B3LYP | X-ray | |
|---|---|---|
| C1—C2 | 1.394 | 1.3806 (13) |
| C2—C3 | 1.404 | 1.3899 (16) |
| C3—C4 | 1.402 | 1.3868 (16) |
| C4—C5 | 1.400 | 1.3871 (16) |
| C5—C6 | 1.393 | 1.3862 (15) |
| C6—C7 | 1.473 | 1.4599 (13) |
| C6—C1 | 1.413 | 1.4009 (13) |
| C7—C8 | 1.568 | 1.5554 (15) |
| C8—N1 | 1.390 | 1.3603 (13) |
| N1—C1 | 1.404 | 1.4127 (13) |
| C7—O1 | 1.206 | 1.2126 (12) |
| C8—O2 | 1.206 | 1.2106 (13) |
| N1—C9 | 1.454 | 1.4606 (13) |
| N1—C8—C7 | 105.9 | 106.20 (8) |
Figure 5The d norm Hirshfeld surface of the title compound (red: negative, white: zero, blue: positive; scale: −0.2101 to 1.3375 a.u.).
Figure 6Fingerprint plots for the title compound: (a) full and delineated into (b) H⋯O/O⋯H, (c) H⋯N/N⋯H and (d) H⋯H contacts.
Experimental details
| Crystal data | |
| Chemical formula | C17H23NO2 |
|
| 273.36 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 150 |
|
| 16.2512 (4), 7.6859 (2), 13.0989 (3) |
| β (°) | 106.640 (1) |
|
| 1567.60 (7) |
|
| 4 |
| Radiation type | Cu |
| μ (mm−1) | 0.59 |
| Crystal size (mm) | 0.24 × 0.20 × 0.14 |
| Data collection | |
| Diffractometer | Bruker D8 VENTURE PHOTON 100 CMOS |
| Absorption correction | Multi-scan ( |
|
| 0.82, 0.92 |
| No. of measured, independent and observed [ | 11594, 3128, 2879 |
|
| 0.029 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.035, 0.096, 1.05 |
| No. of reflections | 3128 |
| No. of parameters | 274 |
| H-atom treatment | All H-atom parameters refined |
| Δρmax, Δρmin (e Å−3) | 0.22, −0.14 |
Computer programs: APEX3 and SAINT (Bruker, 2016 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), DIAMOND (Brandenburg & Putz, 2012 ▸) and SHELXTL (Sheldrick, 2008).
| C17H23NO2 | |
| Monoclinic, | Cu |
| Cell parameters from 9962 reflections | |
| θ = 5.1–74.4° | |
| µ = 0.59 mm−1 | |
| β = 106.640 (1)° | |
| Block, orange-red | |
| 0.24 × 0.20 × 0.14 mm |
| Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 3128 independent reflections |
| Radiation source: INCOATEC IµS micro–focus source | 2879 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 74.4°, θmin = 6.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 11594 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| All H-atom parameters refined | |
| (Δ/σ)max = 0.001 | |
| 3128 reflections | Δρmax = 0.22 e Å−3 |
| 274 parameters | Δρmin = −0.14 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0114 (9) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.08032 (5) | 0.55941 (11) | 0.77294 (5) | 0.0450 (2) | |
| O2 | 0.17619 (6) | 0.85773 (11) | 0.72453 (7) | 0.0545 (3) | |
| N1 | 0.16664 (5) | 0.69895 (11) | 0.57210 (6) | 0.0326 (2) | |
| C1 | 0.13290 (6) | 0.53470 (13) | 0.53302 (7) | 0.0295 (2) | |
| C2 | 0.13301 (6) | 0.45892 (14) | 0.43750 (8) | 0.0351 (2) | |
| H2 | 0.1570 (8) | 0.5200 (17) | 0.3857 (10) | 0.045 (3)* | |
| C3 | 0.09707 (7) | 0.29390 (15) | 0.41701 (9) | 0.0418 (3) | |
| H3 | 0.0954 (9) | 0.2350 (19) | 0.3486 (11) | 0.052 (4)* | |
| C4 | 0.06188 (8) | 0.20883 (15) | 0.48797 (10) | 0.0443 (3) | |
| H4 | 0.0372 (9) | 0.094 (2) | 0.4688 (11) | 0.059 (4)* | |
| C5 | 0.05985 (7) | 0.28781 (14) | 0.58244 (9) | 0.0389 (3) | |
| H5 | 0.0330 (9) | 0.2317 (19) | 0.6319 (11) | 0.052 (4)* | |
| C6 | 0.09576 (6) | 0.45211 (13) | 0.60433 (7) | 0.0314 (2) | |
| C7 | 0.10401 (6) | 0.57137 (14) | 0.69345 (7) | 0.0341 (2) | |
| C8 | 0.15339 (7) | 0.73151 (14) | 0.66825 (8) | 0.0365 (2) | |
| C9 | 0.21591 (7) | 0.80831 (14) | 0.51971 (9) | 0.0363 (2) | |
| H9A | 0.2192 (8) | 0.9233 (18) | 0.5546 (10) | 0.046 (3)* | |
| H9B | 0.1825 (8) | 0.8201 (16) | 0.4435 (10) | 0.039 (3)* | |
| C10 | 0.30417 (7) | 0.73223 (15) | 0.52814 (9) | 0.0373 (2) | |
| H10A | 0.3406 (9) | 0.7374 (18) | 0.6044 (12) | 0.051 (4)* | |
| H10B | 0.2979 (8) | 0.6044 (19) | 0.5107 (10) | 0.044 (3)* | |
| C11 | 0.34813 (7) | 0.82187 (15) | 0.45444 (9) | 0.0386 (3) | |
| H11A | 0.3578 (9) | 0.946 (2) | 0.4751 (11) | 0.051 (4)* | |
| H11B | 0.3094 (8) | 0.8199 (17) | 0.3812 (11) | 0.046 (3)* | |
| C12 | 0.43166 (7) | 0.73437 (15) | 0.45297 (9) | 0.0395 (3) | |
| H12A | 0.4735 (9) | 0.7357 (19) | 0.5258 (11) | 0.052 (4)* | |
| H12B | 0.4207 (9) | 0.611 (2) | 0.4372 (11) | 0.052 (4)* | |
| C13 | 0.47345 (7) | 0.81285 (16) | 0.37372 (9) | 0.0405 (3) | |
| H13A | 0.4834 (9) | 0.940 (2) | 0.3898 (11) | 0.056 (4)* | |
| H13B | 0.4323 (9) | 0.8053 (17) | 0.3010 (11) | 0.049 (4)* | |
| C14 | 0.55597 (7) | 0.72275 (16) | 0.37127 (9) | 0.0405 (3) | |
| H14A | 0.5991 (9) | 0.7303 (19) | 0.4437 (12) | 0.056 (4)* | |
| H14B | 0.5448 (9) | 0.595 (2) | 0.3575 (12) | 0.057 (4)* | |
| C15 | 0.59615 (7) | 0.79507 (16) | 0.28902 (9) | 0.0403 (3) | |
| H15A | 0.6056 (9) | 0.921 (2) | 0.3018 (11) | 0.059 (4)* | |
| H15B | 0.5542 (9) | 0.7861 (17) | 0.2165 (11) | 0.048 (3)* | |
| C16 | 0.67845 (8) | 0.70487 (17) | 0.28662 (10) | 0.0448 (3) | |
| H16A | 0.7217 (10) | 0.725 (2) | 0.3567 (13) | 0.064 (4)* | |
| H16B | 0.6688 (10) | 0.575 (2) | 0.2808 (13) | 0.068 (4)* | |
| C17 | 0.71335 (9) | 0.76729 (19) | 0.19762 (11) | 0.0494 (3) | |
| H17A | 0.6695 (11) | 0.753 (2) | 0.1291 (14) | 0.070 (5)* | |
| H17B | 0.7272 (12) | 0.892 (3) | 0.2051 (14) | 0.081 (5)* | |
| H17C | 0.7687 (12) | 0.699 (2) | 0.1952 (14) | 0.076 (5)* |
| O1 | 0.0578 (5) | 0.0554 (5) | 0.0250 (4) | 0.0034 (4) | 0.0169 (3) | 0.0028 (3) |
| O2 | 0.0739 (6) | 0.0483 (5) | 0.0427 (5) | −0.0124 (4) | 0.0191 (4) | −0.0180 (4) |
| N1 | 0.0383 (5) | 0.0331 (4) | 0.0272 (4) | −0.0027 (3) | 0.0110 (3) | −0.0016 (3) |
| C1 | 0.0299 (5) | 0.0327 (5) | 0.0254 (4) | 0.0014 (4) | 0.0072 (3) | −0.0003 (3) |
| C2 | 0.0360 (5) | 0.0430 (6) | 0.0286 (5) | −0.0006 (4) | 0.0129 (4) | −0.0041 (4) |
| C3 | 0.0421 (6) | 0.0468 (6) | 0.0384 (6) | −0.0016 (5) | 0.0148 (4) | −0.0141 (5) |
| C4 | 0.0477 (6) | 0.0365 (6) | 0.0510 (7) | −0.0068 (5) | 0.0178 (5) | −0.0096 (5) |
| C5 | 0.0418 (6) | 0.0376 (6) | 0.0394 (6) | −0.0019 (4) | 0.0149 (4) | 0.0029 (4) |
| C6 | 0.0338 (5) | 0.0353 (5) | 0.0251 (4) | 0.0021 (4) | 0.0086 (3) | 0.0016 (4) |
| C7 | 0.0385 (5) | 0.0408 (5) | 0.0222 (4) | 0.0039 (4) | 0.0076 (4) | 0.0020 (4) |
| C8 | 0.0426 (6) | 0.0390 (5) | 0.0270 (5) | 0.0006 (4) | 0.0083 (4) | −0.0035 (4) |
| C9 | 0.0394 (6) | 0.0341 (5) | 0.0360 (5) | −0.0014 (4) | 0.0113 (4) | 0.0058 (4) |
| C10 | 0.0365 (5) | 0.0390 (6) | 0.0357 (5) | −0.0010 (4) | 0.0092 (4) | 0.0072 (4) |
| C11 | 0.0375 (5) | 0.0393 (6) | 0.0381 (5) | −0.0022 (4) | 0.0095 (4) | 0.0080 (4) |
| C12 | 0.0367 (6) | 0.0422 (6) | 0.0387 (6) | −0.0016 (4) | 0.0094 (4) | 0.0068 (4) |
| C13 | 0.0371 (6) | 0.0461 (6) | 0.0370 (6) | −0.0011 (4) | 0.0086 (4) | 0.0070 (5) |
| C14 | 0.0368 (6) | 0.0457 (6) | 0.0378 (6) | −0.0014 (4) | 0.0088 (4) | 0.0058 (4) |
| C15 | 0.0384 (6) | 0.0450 (6) | 0.0364 (5) | −0.0016 (4) | 0.0090 (4) | 0.0052 (4) |
| C16 | 0.0388 (6) | 0.0523 (7) | 0.0435 (6) | −0.0006 (5) | 0.0118 (5) | 0.0066 (5) |
| C17 | 0.0496 (7) | 0.0541 (7) | 0.0486 (7) | −0.0067 (6) | 0.0205 (6) | −0.0001 (6) |
| O1—C7 | 1.2126 (12) | C10—H10B | 1.007 (14) |
| O2—C8 | 1.2106 (13) | C11—C12 | 1.5200 (16) |
| N1—C8 | 1.3603 (13) | C11—H11A | 0.989 (15) |
| N1—C1 | 1.4127 (13) | C11—H11B | 0.986 (14) |
| N1—C9 | 1.4606 (13) | C12—C13 | 1.5186 (15) |
| C1—C2 | 1.3806 (13) | C12—H12A | 1.000 (14) |
| C1—C6 | 1.4009 (13) | C12—H12B | 0.979 (16) |
| C2—C3 | 1.3899 (16) | C13—C14 | 1.5178 (16) |
| C2—H2 | 0.992 (13) | C13—H13A | 1.007 (16) |
| C3—C4 | 1.3868 (16) | C13—H13B | 0.997 (14) |
| C3—H3 | 0.997 (14) | C14—C15 | 1.5163 (15) |
| C4—C5 | 1.3871 (16) | C14—H14A | 1.007 (15) |
| C4—H4 | 0.971 (16) | C14—H14B | 1.002 (16) |
| C5—C6 | 1.3862 (15) | C15—C16 | 1.5147 (17) |
| C5—H5 | 0.980 (14) | C15—H15A | 0.986 (17) |
| C6—C7 | 1.4599 (13) | C15—H15B | 1.000 (14) |
| C7—C8 | 1.5554 (15) | C16—C17 | 1.5132 (16) |
| C9—C10 | 1.5233 (15) | C16—H16A | 0.995 (17) |
| C9—H9A | 0.989 (14) | C16—H16B | 1.011 (18) |
| C9—H9B | 0.994 (13) | C17—H17A | 0.979 (18) |
| C10—C11 | 1.5204 (14) | C17—H17B | 0.98 (2) |
| C10—H10A | 1.006 (15) | C17—H17C | 1.050 (18) |
| C8—N1—C1 | 110.61 (8) | C10—C11—H11A | 109.2 (8) |
| C8—N1—C9 | 125.63 (9) | C12—C11—H11B | 107.8 (8) |
| C1—N1—C9 | 123.52 (8) | C10—C11—H11B | 109.0 (8) |
| C2—C1—C6 | 121.72 (9) | H11A—C11—H11B | 106.7 (11) |
| C2—C1—N1 | 127.18 (9) | C13—C12—C11 | 114.13 (9) |
| C6—C1—N1 | 111.09 (8) | C13—C12—H12A | 109.5 (8) |
| C1—C2—C3 | 116.77 (9) | C11—C12—H12A | 110.4 (8) |
| C1—C2—H2 | 121.5 (8) | C13—C12—H12B | 109.4 (8) |
| C3—C2—H2 | 121.7 (8) | C11—C12—H12B | 108.8 (8) |
| C4—C3—C2 | 122.14 (10) | H12A—C12—H12B | 104.1 (12) |
| C4—C3—H3 | 118.6 (8) | C14—C13—C12 | 113.83 (9) |
| C2—C3—H3 | 119.3 (8) | C14—C13—H13A | 111.1 (8) |
| C3—C4—C5 | 120.75 (10) | C12—C13—H13A | 108.6 (8) |
| C3—C4—H4 | 118.3 (8) | C14—C13—H13B | 108.0 (8) |
| C5—C4—H4 | 120.9 (8) | C12—C13—H13B | 108.7 (8) |
| C6—C5—C4 | 117.84 (10) | H13A—C13—H13B | 106.3 (11) |
| C6—C5—H5 | 120.4 (8) | C15—C14—C13 | 114.24 (9) |
| C4—C5—H5 | 121.8 (9) | C15—C14—H14A | 108.8 (8) |
| C5—C6—C1 | 120.73 (9) | C13—C14—H14A | 109.6 (8) |
| C5—C6—C7 | 132.39 (9) | C15—C14—H14B | 108.9 (8) |
| C1—C6—C7 | 106.87 (8) | C13—C14—H14B | 109.5 (8) |
| O1—C7—C6 | 131.29 (10) | H14A—C14—H14B | 105.5 (12) |
| O1—C7—C8 | 123.52 (9) | C16—C15—C14 | 114.17 (10) |
| C6—C7—C8 | 105.19 (8) | C16—C15—H15A | 110.9 (9) |
| O2—C8—N1 | 127.53 (10) | C14—C15—H15A | 108.5 (8) |
| O2—C8—C7 | 126.26 (9) | C16—C15—H15B | 108.3 (8) |
| N1—C8—C7 | 106.20 (8) | C14—C15—H15B | 109.5 (8) |
| N1—C9—C10 | 112.12 (8) | H15A—C15—H15B | 105.0 (11) |
| N1—C9—H9A | 105.1 (8) | C17—C16—C15 | 113.51 (10) |
| C10—C9—H9A | 112.6 (8) | C17—C16—H16A | 109.9 (9) |
| N1—C9—H9B | 108.0 (7) | C15—C16—H16A | 107.7 (9) |
| C10—C9—H9B | 109.9 (7) | C17—C16—H16B | 109.9 (9) |
| H9A—C9—H9B | 108.9 (10) | C15—C16—H16B | 109.6 (9) |
| C11—C10—C9 | 112.57 (9) | H16A—C16—H16B | 105.9 (13) |
| C11—C10—H10A | 111.3 (8) | C16—C17—H17A | 109.7 (10) |
| C9—C10—H10A | 109.3 (8) | C16—C17—H17B | 111.0 (10) |
| C11—C10—H10B | 109.4 (7) | H17A—C17—H17B | 106.5 (15) |
| C9—C10—H10B | 109.0 (7) | C16—C17—H17C | 112.2 (9) |
| H10A—C10—H10B | 104.9 (11) | H17A—C17—H17C | 108.7 (14) |
| C12—C11—C10 | 113.04 (9) | H17B—C17—H17C | 108.6 (14) |
| C12—C11—H11A | 110.9 (8) | ||
| C8—N1—C1—C2 | 178.81 (10) | C1—C6—C7—C8 | −1.98 (10) |
| C9—N1—C1—C2 | −6.62 (15) | C1—N1—C8—O2 | 177.89 (11) |
| C8—N1—C1—C6 | −0.19 (11) | C9—N1—C8—O2 | 3.47 (18) |
| C9—N1—C1—C6 | 174.37 (9) | C1—N1—C8—C7 | −1.07 (11) |
| C6—C1—C2—C3 | −2.13 (15) | C9—N1—C8—C7 | −175.49 (9) |
| N1—C1—C2—C3 | 178.96 (9) | O1—C7—C8—O2 | 2.55 (17) |
| C1—C2—C3—C4 | 0.59 (16) | C6—C7—C8—O2 | −177.09 (11) |
| C2—C3—C4—C5 | 1.19 (18) | O1—C7—C8—N1 | −178.47 (10) |
| C3—C4—C5—C6 | −1.41 (17) | C6—C7—C8—N1 | 1.89 (11) |
| C4—C5—C6—C1 | −0.11 (15) | C8—N1—C9—C10 | 103.80 (12) |
| C4—C5—C6—C7 | 179.33 (11) | C1—N1—C9—C10 | −69.94 (12) |
| C2—C1—C6—C5 | 1.95 (15) | N1—C9—C10—C11 | 167.45 (9) |
| N1—C1—C6—C5 | −178.98 (9) | C9—C10—C11—C12 | −173.60 (9) |
| C2—C1—C6—C7 | −177.62 (9) | C10—C11—C12—C13 | 175.57 (9) |
| N1—C1—C6—C7 | 1.45 (11) | C11—C12—C13—C14 | −178.95 (10) |
| C5—C6—C7—O1 | −1.08 (19) | C12—C13—C14—C15 | 177.47 (10) |
| C1—C6—C7—O1 | 178.42 (11) | C13—C14—C15—C16 | −179.94 (10) |
| C5—C6—C7—C8 | 178.52 (11) | C14—C15—C16—C17 | 174.71 (10) |
| H··· | ||||
| C2—H2···O2i | 0.992 (13) | 2.412 (13) | 3.3737 (13) | 163.3 (10) |
| C3—H3···O1ii | 0.997 (14) | 2.454 (15) | 3.2734 (14) | 139.0 (11) |
| C9—H9 | 0.994 (13) | 2.546 (13) | 3.5012 (13) | 161.0 (10) |
| C17—H17 | 0.98 (2) | 2.49 (2) | 3.3941 (17) | 153.3 (15) |