Literature DB >> 24764928

1-Do-decyl-indoline-2,3-dione.

Fatima-Zahrae Qachchachi1, Fouad Ouazzani Chahdi1, Houria Misbahi2, Michael Bodensteiner3, Lahcen El Ammari4.   

Abstract

The structure of the title compound, C20H29NO2, is isotypic to that of its homologue 1-octylindoline-2,3-dione. The indoline ring and the two carbonyl-group O atoms are approximately coplanar, the largest deviation from the mean plane being 0.0760 (10) Å. The mean plane through the fused-ring system is nearly perpendicular to the mean plane passing through the 1-dodecyl chain [dihedral angle = 77.69 (5)°]. All C atoms of the dodecyl group are in an anti-periplanar arrangement. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2014        PMID: 24764928      PMCID: PMC3998367          DOI: 10.1107/S1600536814001792

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activity of indoline derivatives, see: Bhrigu et al. (2010 ▶); Malhotra et al. (2011 ▶); Da Silva et al. (2001 ▶); Ramachandran (2011 ▶); Smitha et al. (2008 ▶). For similar compounds see: Qachchachi et al. (2013 ▶).

Experimental

Crystal data

C20H29NO2 M = 315.44 Monoclinic, a = 25.2013 (7) Å b = 4.66818 (9) Å c = 15.7013 (4) Å β = 104.926 (3)° V = 1784.84 (7) Å3 Z = 4 Cu Kα radiation μ = 0.58 mm−1 T = 123 K 0.12 × 0.11 × 0.04 mm

Data collection

Oxford Diffraction SuperNova (single source at offset, Atlas) diffractometer Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2012 ▶); analytical numeric absorption correction using a multi-faceted crystal model (Clark & Reid, 1995 ▶)] T min = 0.942, T max = 0.979 12640 measured reflections 3493 independent reflections 3039 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.100 S = 1.02 3493 reflections 208 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814001792/rz5103sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814001792/rz5103Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814001792/rz5103Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H29NO2F(000) = 688
Mr = 315.44Dx = 1.174 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 6237 reflections
a = 25.2013 (7) Åθ = 5.4–73.8°
b = 4.66818 (9) ŵ = 0.58 mm1
c = 15.7013 (4) ÅT = 123 K
β = 104.926 (3)°Plate, clear light orange
V = 1784.84 (7) Å30.12 × 0.11 × 0.04 mm
Z = 4
Oxford Diffraction SuperNova (single source at offset, Atlas) diffractometer3493 independent reflections
Radiation source: SuperNova (Cu) X-ray Source3039 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.021
Detector resolution: 10.3546 pixels mm-1θmax = 73.6°, θmin = 3.6°
ω scansh = −31→30
Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2012); analytical numeric absorption correction using a multi-faceted crystal model (Clark & Reid, 1995)]k = −5→5
Tmin = 0.942, Tmax = 0.979l = −19→18
12640 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0528P)2 + 0.4135P] where P = (Fo2 + 2Fc2)/3
3493 reflections(Δ/σ)max = 0.001
208 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.11717 (4)0.3582 (2)0.56405 (7)0.0263 (2)
C20.07145 (4)0.5831 (2)0.52742 (7)0.0256 (2)
C30.07308 (4)0.6313 (2)0.43624 (7)0.0221 (2)
C40.11376 (4)0.4511 (2)0.41950 (7)0.0207 (2)
C50.12551 (4)0.4485 (2)0.33845 (7)0.0243 (2)
H50.15270.32490.32680.029*
C60.09572 (4)0.6350 (2)0.27432 (7)0.0264 (2)
H60.10300.63820.21790.032*
C70.05561 (4)0.8162 (2)0.29048 (7)0.0280 (2)
H70.03630.94190.24550.034*
C80.04351 (4)0.8149 (2)0.37185 (7)0.0258 (2)
H80.01580.93610.38310.031*
C90.18532 (4)0.0978 (2)0.50360 (8)0.0262 (2)
H9A0.1802−0.01610.44890.031*
H9B0.1870−0.03700.55290.031*
C100.23949 (4)0.2615 (2)0.52023 (8)0.0264 (2)
H10A0.23960.37700.46740.032*
H10B0.24210.39510.57010.032*
C110.28944 (4)0.0655 (2)0.54105 (8)0.0261 (2)
H11A0.2866−0.06970.49150.031*
H11B0.2896−0.04830.59430.031*
C120.34340 (4)0.2303 (2)0.55654 (8)0.0269 (2)
H12A0.34410.33390.50180.032*
H12B0.34480.37480.60320.032*
C130.39431 (4)0.0414 (3)0.58348 (8)0.0275 (2)
H13A0.3930−0.10320.53690.033*
H13B0.3938−0.06200.63830.033*
C140.44783 (4)0.2094 (3)0.59858 (8)0.0283 (3)
H14A0.44850.31050.54340.034*
H14B0.44870.35630.64440.034*
C150.49914 (4)0.0237 (3)0.62696 (8)0.0285 (3)
H15A0.4984−0.12320.58120.034*
H15B0.4986−0.07710.68220.034*
C160.55241 (4)0.1948 (3)0.64174 (8)0.0290 (3)
H16A0.55280.29570.58650.035*
H16B0.55310.34160.68750.035*
C170.60399 (4)0.0110 (3)0.67010 (8)0.0290 (3)
H17A0.6033−0.13580.62430.035*
H17B0.6036−0.09000.72540.035*
C180.65705 (4)0.1830 (3)0.68478 (8)0.0287 (3)
H18A0.65740.28380.62940.034*
H18B0.65760.33020.73040.034*
C190.70879 (4)0.0017 (3)0.71327 (8)0.0319 (3)
H19A0.7083−0.14610.66780.038*
H19B0.7087−0.09810.76890.038*
C200.76140 (5)0.1765 (3)0.72716 (9)0.0383 (3)
H20A0.76260.32040.77310.046*
H20B0.76220.27240.67200.046*
H20C0.79320.04910.74530.046*
N10.13859 (4)0.2877 (2)0.49531 (6)0.0237 (2)
O10.13183 (4)0.2676 (2)0.63893 (5)0.0368 (2)
O20.04303 (3)0.6876 (2)0.57083 (5)0.0350 (2)
U11U22U33U12U13U23
C10.0228 (5)0.0325 (6)0.0234 (5)−0.0083 (4)0.0058 (4)−0.0017 (5)
C20.0203 (5)0.0317 (6)0.0250 (5)−0.0069 (4)0.0063 (4)−0.0076 (5)
C30.0169 (4)0.0255 (5)0.0240 (5)−0.0034 (4)0.0056 (4)−0.0056 (4)
C40.0168 (4)0.0231 (5)0.0212 (5)−0.0028 (4)0.0029 (4)−0.0021 (4)
C50.0201 (5)0.0290 (5)0.0248 (5)0.0006 (4)0.0077 (4)−0.0035 (4)
C60.0262 (5)0.0324 (6)0.0206 (5)−0.0028 (5)0.0063 (4)−0.0013 (4)
C70.0248 (5)0.0290 (6)0.0274 (6)0.0008 (4)0.0017 (4)0.0018 (5)
C80.0192 (5)0.0263 (5)0.0308 (6)0.0010 (4)0.0044 (4)−0.0040 (5)
C90.0192 (5)0.0256 (5)0.0320 (6)0.0005 (4)0.0034 (4)0.0025 (5)
C100.0192 (5)0.0257 (5)0.0322 (6)−0.0005 (4)0.0031 (4)0.0015 (5)
C110.0188 (5)0.0277 (5)0.0297 (6)0.0002 (4)0.0025 (4)0.0019 (5)
C120.0193 (5)0.0294 (6)0.0308 (6)−0.0003 (4)0.0042 (4)0.0016 (5)
C130.0188 (5)0.0316 (6)0.0308 (6)0.0004 (4)0.0038 (4)0.0014 (5)
C140.0189 (5)0.0336 (6)0.0315 (6)0.0002 (4)0.0046 (4)0.0015 (5)
C150.0188 (5)0.0342 (6)0.0315 (6)0.0005 (4)0.0043 (4)0.0023 (5)
C160.0191 (5)0.0345 (6)0.0323 (6)0.0000 (4)0.0048 (4)0.0004 (5)
C170.0194 (5)0.0357 (6)0.0308 (6)0.0012 (5)0.0047 (4)0.0034 (5)
C180.0194 (5)0.0355 (6)0.0300 (6)0.0003 (4)0.0041 (4)0.0005 (5)
C190.0217 (5)0.0403 (6)0.0326 (6)0.0029 (5)0.0052 (5)0.0050 (5)
C200.0193 (5)0.0507 (8)0.0428 (7)0.0010 (5)0.0044 (5)0.0007 (6)
N10.0187 (4)0.0286 (5)0.0232 (5)−0.0001 (4)0.0042 (3)0.0013 (4)
O10.0369 (5)0.0487 (5)0.0239 (4)−0.0068 (4)0.0060 (3)0.0062 (4)
O20.0287 (4)0.0505 (5)0.0288 (4)−0.0021 (4)0.0127 (3)−0.0127 (4)
C1—O11.2142 (14)C12—H12A0.9900
C1—N11.3656 (14)C12—H12B0.9900
C1—C21.5552 (16)C13—C141.5252 (14)
C2—O21.2113 (13)C13—H13A0.9900
C2—C31.4601 (14)C13—H13B0.9900
C3—C81.3869 (16)C14—C151.5251 (15)
C3—C41.4027 (14)C14—H14A0.9900
C4—C51.3789 (14)C14—H14B0.9900
C4—N11.4163 (14)C15—C161.5275 (14)
C5—C61.3950 (16)C15—H15A0.9900
C5—H50.9500C15—H15B0.9900
C6—C71.3909 (16)C16—C171.5250 (15)
C6—H60.9500C16—H16A0.9900
C7—C81.3878 (15)C16—H16B0.9900
C7—H70.9500C17—C181.5257 (15)
C8—H80.9500C17—H17A0.9900
C9—N11.4528 (13)C17—H17B0.9900
C9—C101.5270 (14)C18—C191.5220 (15)
C9—H9A0.9900C18—H18A0.9900
C9—H9B0.9900C18—H18B0.9900
C10—C111.5222 (14)C19—C201.5239 (16)
C10—H10A0.9900C19—H19A0.9900
C10—H10B0.9900C19—H19B0.9900
C11—C121.5265 (14)C20—H20A0.9800
C11—H11A0.9900C20—H20B0.9800
C11—H11B0.9900C20—H20C0.9800
C12—C131.5238 (14)
O1—C1—N1126.70 (11)C14—C13—H13A108.9
O1—C1—C2127.24 (10)C12—C13—H13B108.9
N1—C1—C2106.04 (9)C14—C13—H13B108.9
O2—C2—C3131.26 (11)H13A—C13—H13B107.8
O2—C2—C1123.57 (10)C15—C14—C13113.73 (10)
C3—C2—C1105.16 (8)C15—C14—H14A108.8
C8—C3—C4121.03 (10)C13—C14—H14A108.8
C8—C3—C2131.64 (10)C15—C14—H14B108.8
C4—C3—C2107.32 (9)C13—C14—H14B108.8
C5—C4—C3121.28 (10)H14A—C14—H14B107.7
C5—C4—N1128.13 (9)C14—C15—C16113.14 (10)
C3—C4—N1110.58 (9)C14—C15—H15A109.0
C4—C5—C6117.21 (9)C16—C15—H15A109.0
C4—C5—H5121.4C14—C15—H15B109.0
C6—C5—H5121.4C16—C15—H15B109.0
C7—C6—C5121.95 (10)H15A—C15—H15B107.8
C7—C6—H6119.0C17—C16—C15113.57 (10)
C5—C6—H6119.0C17—C16—H16A108.9
C8—C7—C6120.51 (10)C15—C16—H16A108.9
C8—C7—H7119.7C17—C16—H16B108.9
C6—C7—H7119.7C15—C16—H16B108.9
C3—C8—C7118.01 (10)H16A—C16—H16B107.7
C3—C8—H8121.0C16—C17—C18113.33 (10)
C7—C8—H8121.0C16—C17—H17A108.9
N1—C9—C10112.22 (9)C18—C17—H17A108.9
N1—C9—H9A109.2C16—C17—H17B108.9
C10—C9—H9A109.2C18—C17—H17B108.9
N1—C9—H9B109.2H17A—C17—H17B107.7
C10—C9—H9B109.2C19—C18—C17113.75 (10)
H9A—C9—H9B107.9C19—C18—H18A108.8
C11—C10—C9112.92 (9)C17—C18—H18A108.8
C11—C10—H10A109.0C19—C18—H18B108.8
C9—C10—H10A109.0C17—C18—H18B108.8
C11—C10—H10B109.0H18A—C18—H18B107.7
C9—C10—H10B109.0C18—C19—C20113.08 (11)
H10A—C10—H10B107.8C18—C19—H19A109.0
C10—C11—C12112.63 (9)C20—C19—H19A109.0
C10—C11—H11A109.1C18—C19—H19B109.0
C12—C11—H11A109.1C20—C19—H19B109.0
C10—C11—H11B109.1H19A—C19—H19B107.8
C12—C11—H11B109.1C19—C20—H20A109.5
H11A—C11—H11B107.8C19—C20—H20B109.5
C13—C12—C11113.86 (9)H20A—C20—H20B109.5
C13—C12—H12A108.8C19—C20—H20C109.5
C11—C12—H12A108.8H20A—C20—H20C109.5
C13—C12—H12B108.8H20B—C20—H20C109.5
C11—C12—H12B108.8C1—N1—C4110.82 (9)
H12A—C12—H12B107.7C1—N1—C9123.54 (9)
C12—C13—C14113.16 (9)C4—N1—C9125.19 (9)
C12—C13—H13A108.9
D—H···AD—HH···AD···AD—H···A
C6—H6···O1i0.952.473.1423 (14)127
C6—H6···O2ii0.952.553.2360 (13)130
C8—H8···O2iii0.952.523.4598 (13)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6⋯O1i 0.952.473.1423 (14)127
C6—H6⋯O2ii 0.952.553.2360 (13)130
C8—H8⋯O2iii 0.952.523.4598 (13)169

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Octylindoline-2,3-dione.

Authors:  Fatima-Zahrae Qachchachi; Youssef Kandri Rodi; El Mokhtar Essassi; Werner Kunz; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-23
  2 in total

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