Literature DB >> 24449699

Forward and reverse mutagenesis in C. elegans.

Lena M Kutscher1, Shai Shaham.   

Abstract

Mutagenesis drives natural selection. In the lab, mutations allow gene function to be deciphered. C. elegans is highly amendable to functional genetics because of its short generation time, ease of use, and wealth of available gene-alteration techniques. Here we provide an overview of historical and contemporary methods for mutagenesis in C. elegans, and discuss principles and strategies for forward (genome-wide mutagenesis) and reverse (target-selected and gene-specific mutagenesis) genetic studies in this animal.

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Year:  2014        PMID: 24449699      PMCID: PMC4078664          DOI: 10.1895/wormbook.1.167.1

Source DB:  PubMed          Journal:  WormBook        ISSN: 1551-8507


  127 in total

1.  Targeted genome editing across species using ZFNs and TALENs.

Authors:  Andrew J Wood; Te-Wen Lo; Bryan Zeitler; Catherine S Pickle; Edward J Ralston; Andrew H Lee; Rainier Amora; Jeffrey C Miller; Elo Leung; Xiangdong Meng; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Barbara J Meyer
Journal:  Science       Date:  2011-06-23       Impact factor: 47.728

2.  Targeted screening for induced mutations.

Authors:  C M McCallum; L Comai; E A Greene; S Henikoff
Journal:  Nat Biotechnol       Date:  2000-04       Impact factor: 54.908

3.  Ethylation of nucleic acids by ethylnitrosourea-1- 14 C in the fetal and adult rat.

Authors:  R Goth; M F Rajewsky
Journal:  Cancer Res       Date:  1972-07       Impact factor: 12.701

4.  CloudMap: a cloud-based pipeline for analysis of mutant genome sequences.

Authors:  Gregory Minevich; Danny S Park; Daniel Blankenberg; Richard J Poole; Oliver Hobert
Journal:  Genetics       Date:  2012-10-10       Impact factor: 4.562

Review 5.  C. elegans deletion mutant screening.

Authors:  Robert J Barstead; Donald G Moerman
Journal:  Methods Mol Biol       Date:  2006

6.  Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization.

Authors:  Jason S Maydan; Stephane Flibotte; Mark L Edgley; Joanne Lau; Rebecca R Selzer; Todd A Richmond; Nathan J Pofahl; James H Thomas; Donald G Moerman
Journal:  Genome Res       Date:  2007-01-31       Impact factor: 9.043

7.  Improved detection of small deletions in complex pools of DNA.

Authors:  Mark Edgley; Anil D'Souza; Gary Moulder; Sheldon McKay; Bin Shen; Erin Gilchrist; Donald Moerman; Robert Barstead
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

8.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

Authors:  Nannan Chang; Changhong Sun; Lu Gao; Dan Zhu; Xiufei Xu; Xiaojun Zhu; Jing-Wei Xiong; Jianzhong Jeff Xi
Journal:  Cell Res       Date:  2013-03-26       Impact factor: 25.617

9.  Shotgun cloning of transposon insertions in the genome of Caenorhabditis elegans.

Authors:  Alexander M van der Linden; Ronald H A Plasterk
Journal:  Comp Funct Genomics       Date:  2004

10.  galign: a tool for rapid genome polymorphism discovery.

Authors:  Shai Shaham
Journal:  PLoS One       Date:  2009-09-25       Impact factor: 3.240

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  30 in total

1.  Optogenetic Random Mutagenesis Using Histone-miniSOG in C. elegans.

Authors:  Kentaro Noma; Yishi Jin
Journal:  J Vis Exp       Date:  2016-11-14       Impact factor: 1.355

Review 2.  Next-Generation Sequencing-Based Approaches for Mutation Mapping and Identification in Caenorhabditis elegans.

Authors:  Maria Doitsidou; Sophie Jarriault; Richard J Poole
Journal:  Genetics       Date:  2016-10       Impact factor: 4.562

3.  NHJ-1 Is Required for Canonical Nonhomologous End Joining in Caenorhabditis elegans.

Authors:  Aleksandar Vujin; Steven J Jones; Monique Zetka
Journal:  Genetics       Date:  2020-05-26       Impact factor: 4.562

4.  Sensory cilia as the Achilles heel of nematodes when attacked by carnivorous mushrooms.

Authors:  Ching-Han Lee; Han-Wen Chang; Ching-Ting Yang; Niaz Wali; Jiun-Jie Shie; Yen-Ping Hsueh
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-02       Impact factor: 11.205

Review 5.  Caenorhabditis elegans as an Emerging Model for Virus-Host Interactions.

Authors:  Don B Gammon
Journal:  J Virol       Date:  2017-11-14       Impact factor: 5.103

6.  RNAi screening of human glycogene orthologs in the nematode Caenorhabditis elegans and the construction of the C. elegans glycogene database.

Authors:  Sayaka Akiyoshi; Kazuko H Nomura; Katsufumi Dejima; Daisuke Murata; Ayako Matsuda; Nanako Kanaki; Tetsuro Takaki; Hiroyuki Mihara; Takayuki Nagaishi; Shuhei Furukawa; Keiko-Gengyo Ando; Sawako Yoshina; Shohei Mitani; Akira Togayachi; Yoshinori Suzuki; Toshihide Shikanai; Hisashi Narimatsu; Kazuya Nomura
Journal:  Glycobiology       Date:  2014-08-04       Impact factor: 4.313

7.  A natural variant and engineered mutation in a GPCR promote DEET resistance in C. elegans.

Authors:  Emily J Dennis; May Dobosiewicz; Xin Jin; Laura B Duvall; Philip S Hartman; Cornelia I Bargmann; Leslie B Vosshall
Journal:  Nature       Date:  2018-09-26       Impact factor: 49.962

8.  An Intracellular Pathogen Response Pathway Promotes Proteostasis in C. elegans.

Authors:  Kirthi C Reddy; Tal Dror; Jessica N Sowa; Johan Panek; Kevin Chen; Efrem S Lim; David Wang; Emily R Troemel
Journal:  Curr Biol       Date:  2017-11-02       Impact factor: 10.834

9.  A terminal selector prevents a Hox transcriptional switch to safeguard motor neuron identity throughout life.

Authors:  Weidong Feng; Yinan Li; Pauline Dao; Jihad Aburas; Priota Islam; Benayahu Elbaz; Anna Kolarzyk; André Ex Brown; Paschalis Kratsios
Journal:  Elife       Date:  2020-01-03       Impact factor: 8.140

10.  RAB-35 and ARF-6 GTPases Mediate Engulfment and Clearance Following Linker Cell-Type Death.

Authors:  Lena M Kutscher; Wolfgang Keil; Shai Shaham
Journal:  Dev Cell       Date:  2018-09-13       Impact factor: 12.270

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