Literature DB >> 10748531

Targeted screening for induced mutations.

C M McCallum1, L Comai, E A Greene, S Henikoff.   

Abstract

With the accumulation of large-scale sequence data, emphasis in genomics has shifted from determining gene structure to testing gene function, and this relies on reverse genetic methodology. Here we explore the feasibility of screening for chemically induced mutations in target sequences in Arabidopsis thaliana. Our TILLING (Targeting Induced Local Lesions IN Genomes) method combines the efficiency of ethyl methanesulfonate (EMS)-induced mutagenesis with the ability of denaturing high-performance liquid chromatography (DHPLC) to detect base pair changes by heteroduplex analysis. Importantly, this method generates a wide range of mutant alleles, is fast and automatable, and is applicable to any organism that can be chemically mutagenized.

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Year:  2000        PMID: 10748531     DOI: 10.1038/74542

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  159 in total

1.  Targeted recovery of mutations in Drosophila.

Authors:  A Bentley; B MacLennan; J Calvo; C R Dearolf
Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

2.  Temperature-modulated array high-performance liquid chromatography.

Authors:  A Premstaller; W Xiao; H Oberacher; M O'Keefe; D Stern; T Willis; C G Huber; P J Oefner
Journal:  Genome Res       Date:  2001-11       Impact factor: 9.043

3.  Large-scale discovery of induced point mutations with high-throughput TILLING.

Authors:  Bradley J Till; Steven H Reynolds; Elizabeth A Greene; Christine A Codomo; Linda C Enns; Jessica E Johnson; Chris Burtner; Anthony R Odden; Kim Young; Nicholas E Taylor; Jorja G Henikoff; Luca Comai; Steven Henikoff
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

4.  Two Arabidopsis methylation-deficiency mutations confer only partial effects on a methylated endogenous gene family.

Authors:  L Bartee; J Bender
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

Review 5.  Chlamydomonas reinhardtii at the crossroads of genomics.

Authors:  Arthur R Grossman; Elizabeth E Harris; Charles Hauser; Paul A Lefebvre; Diego Martinez; Dan Rokhsar; Jeff Shrager; Carolyn D Silflow; David Stern; Olivier Vallon; Zhaoduo Zhang
Journal:  Eukaryot Cell       Date:  2003-12

6.  The Zuker collection: a resource for the analysis of autosomal gene function in Drosophila melanogaster.

Authors:  Edmund J Koundakjian; David M Cowan; Robert W Hardy; Ann H Becker
Journal:  Genetics       Date:  2004-05       Impact factor: 4.562

7.  Efficient target-selected mutagenesis in zebrafish.

Authors:  Erno Wienholds; Freek van Eeden; Marit Kosters; Josine Mudde; Ronald H A Plasterk; Edwin Cuppen
Journal:  Genome Res       Date:  2003-11-12       Impact factor: 9.043

8.  The Protein Phosphatases and Protein Kinases of Arabidopsis thaliana.

Authors:  Huachun Wang; David Chevalier; Clayton Larue; Sung Ki Cho; John C Walker
Journal:  Arabidopsis Book       Date:  2007-02-20

9.  dHPLC efficiency for semi-automated cDNA-AFLP analyses and fragment collection in the apple scab-resistance gene model.

Authors:  Roberta Paris; Luca Dondini; Graziano Zannini; Daniela Bastia; Elena Marasco; Valentina Gualdi; Valeria Rizzi; Pietro Piffanelli; Vilma Mantovani; Stefano Tartarini
Journal:  Planta       Date:  2012-01-21       Impact factor: 4.116

10.  Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation.

Authors:  Karine Gallardo; Christine Le Signor; Joël Vandekerckhove; Richard D Thompson; Judith Burstin
Journal:  Plant Physiol       Date:  2003-09-11       Impact factor: 8.340

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