Literature DB >> 24443566

Cryo-electron microscopic structure of SecA protein bound to the 70S ribosome.

Rajkumar Singh1, Christian Kraft, Rahul Jaiswal, Kushal Sejwal, Vikram Babu Kasaragod, Jochen Kuper, Jörg Bürger, Thorsten Mielke, Joen Luirink, Shashi Bhushan.   

Abstract

SecA is an ATP-dependent molecular motor pumping secretory and outer membrane proteins across the cytoplasmic membrane in bacteria. SecA associates with the protein-conducting channel, the heterotrimeric SecYEG complex, in a so-called posttranslational manner. A recent study further showed binding of a monomeric state of SecA to the ribosome. However, the true oligomeric state of SecA remains controversial because SecA can also form functional dimers, and high-resolution crystal structures exist for both the monomer and the dimer. Here we present the cryo-electron microscopy structures of Escherichia coli SecA bound to the ribosome. We show that not only a monomeric SecA binds to the ribosome but also that two copies of SecA can be observed that form an elongated dimer. Two copies of SecA completely surround the tunnel exit, providing a unique environment to the nascent polypeptides emerging from the ribosome. We identified the N-terminal helix of SecA required for a stable association with the ribosome. The structures indicate a possible function of the dimeric form of SecA at the ribosome.

Entities:  

Keywords:  70S; Cryo-EM; Electron Microscopy (EM); Protein Secretion; Protein Translocation; Ribosome; Ribosomes; SecA; SecYEG; Single Particle Analysis

Mesh:

Substances:

Year:  2014        PMID: 24443566      PMCID: PMC3945378          DOI: 10.1074/jbc.M113.506634

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  53 in total

1.  A large conformational change of the translocation ATPase SecA.

Authors:  Andrew R Osborne; William M Clemons; Tom A Rapoport
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-15       Impact factor: 11.205

2.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

3.  Escherichia coli SecA truncated at its termini is functional and dimeric.

Authors:  Spyridoula Karamanou; Giorgos Sianidis; Giorgos Gouridis; Charalambos Pozidis; Yiannis Papanikolau; Efrosyni Papanikou; Anastassios Economou
Journal:  FEBS Lett       Date:  2005-01-26       Impact factor: 4.124

4.  Asymmetric binding between SecA and SecB two symmetric proteins: implications for function in export.

Authors:  Linda L Randall; Jennine M Crane; Angela A Lilly; Gseping Liu; Chunfeng Mao; Chetan N Patel; Simon J S Hardy
Journal:  J Mol Biol       Date:  2005-04-29       Impact factor: 5.469

5.  Dimeric SecA is essential for protein translocation.

Authors:  Lucia B Jilaveanu; Christopher R Zito; Donald Oliver
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-16       Impact factor: 11.205

6.  Covalently dimerized SecA is functional in protein translocation.

Authors:  Jeanine de Keyzer; Eli O van der Sluis; Robin E J Spelbrink; Niels Nijstad; Ben de Kruijff; Nico Nouwen; Chris van der Does; Arnold J M Driessen
Journal:  J Biol Chem       Date:  2005-08-22       Impact factor: 5.157

7.  SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields.

Authors:  J Frank; M Radermacher; P Penczek; J Zhu; Y Li; M Ladjadj; A Leith
Journal:  J Struct Biol       Date:  1996 Jan-Feb       Impact factor: 2.867

8.  Regulation of the Escherichia coli secA gene by protein secretion defects: analysis of secA, secB, secD, and secY mutants.

Authors:  E E Rollo; D B Oliver
Journal:  J Bacteriol       Date:  1988-07       Impact factor: 3.490

9.  SecA, the peripheral subunit of the Escherichia coli precursor protein translocase, is functional as a dimer.

Authors:  A J Driessen
Journal:  Biochemistry       Date:  1993-12-07       Impact factor: 3.162

10.  Probing the affinity of SecA for signal peptide in different environments.

Authors:  Monika Musial-Siwek; Sharyn L Rusch; Debra A Kendall
Journal:  Biochemistry       Date:  2005-10-25       Impact factor: 3.162

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  24 in total

Review 1.  Protein Transport Across the Bacterial Plasma Membrane by the Sec Pathway.

Authors:  Dries Smets; Maria S Loos; Spyridoula Karamanou; Anastassios Economou
Journal:  Protein J       Date:  2019-06       Impact factor: 2.371

2.  Refined measurement of SecA-driven protein secretion reveals that translocation is indirectly coupled to ATP turnover.

Authors:  William J Allen; Daniel W Watkins; Mark S Dillingham; Ian Collinson
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-30       Impact factor: 11.205

Review 3.  Protein export through the bacterial Sec pathway.

Authors:  Alexandra Tsirigotaki; Jozefien De Geyter; Nikolina Šoštaric; Anastassios Economou; Spyridoula Karamanou
Journal:  Nat Rev Microbiol       Date:  2016-11-28       Impact factor: 60.633

4.  Substrate Proteins Take Shape at an Improved Bacterial Translocon.

Authors:  Donald Oliver
Journal:  J Bacteriol       Date:  2018-12-07       Impact factor: 3.490

Review 5.  SecA inhibitors as potential antimicrobial agents: differential actions on SecA-only and SecA-SecYEG protein-conducting channels.

Authors:  Jinshan Jin; Ying-Hsin Hsieh; Arpana S Chaudhary; Jianmei Cui; John E Houghton; Sen-Fang Sui; Binghe Wang; Phang C Tai
Journal:  FEMS Microbiol Lett       Date:  2018-08-01       Impact factor: 2.742

6.  SecA drives transmembrane insertion of RodZ, an unusual single-span membrane protein.

Authors:  Swati Rawat; Lu Zhu; Eric Lindner; Ross E Dalbey; Stephen H White
Journal:  J Mol Biol       Date:  2014-05-15       Impact factor: 5.469

7.  Trigger factor is a bona fide secretory pathway chaperone that interacts with SecB and the translocase.

Authors:  Jozefien De Geyter; Athina G Portaliou; Bindu Srinivasu; Srinath Krishnamurthy; Anastassios Economou; Spyridoula Karamanou
Journal:  EMBO Rep       Date:  2020-04-19       Impact factor: 8.807

8.  Timing and specificity of cotranslational nascent protein modification in bacteria.

Authors:  Chien-I Yang; Hao-Hsuan Hsieh; Shu-Ou Shan
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-30       Impact factor: 11.205

Review 9.  Multitasking SecB chaperones in bacteria.

Authors:  Ambre Sala; Patricia Bordes; Pierre Genevaux
Journal:  Front Microbiol       Date:  2014-12-05       Impact factor: 5.640

Review 10.  Channel crossing: how are proteins shipped across the bacterial plasma membrane?

Authors:  Ian Collinson; Robin A Corey; William J Allen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-10-05       Impact factor: 6.237

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