Literature DB >> 33257538

Refined measurement of SecA-driven protein secretion reveals that translocation is indirectly coupled to ATP turnover.

William J Allen1, Daniel W Watkins1, Mark S Dillingham1, Ian Collinson2.   

Abstract

The universally conserved Sec system is the primary method cells utilize to transport proteins across membranes. Until recently, measuring the activity-a prerequisite for understanding how biological systems work-has been limited to discontinuous protein transport assays with poor time resolution or reported by large, nonnatural tags that perturb the process. The development of an assay based on a split superbright luciferase (NanoLuc) changed this. Here, we exploit this technology to unpick the steps that constitute posttranslational protein transport in bacteria. Under the conditions deployed, the transport of a model preprotein substrate (proSpy) occurs at 200 amino acids (aa) per minute, with SecA able to dissociate and rebind during transport. Prior to that, there is no evidence for a distinct, rate-limiting initiation event. Kinetic modeling suggests that SecA-driven transport activity is best described by a series of large (∼30 aa) steps, each coupled to hundreds of ATP hydrolysis events. The features we describe are consistent with a nondeterministic motor mechanism, such as a Brownian ratchet.

Entities:  

Keywords:  NanoLuc; SecA; SecYEG; molecular motor; protein secretion

Mesh:

Substances:

Year:  2020        PMID: 33257538      PMCID: PMC7749344          DOI: 10.1073/pnas.2010906117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  46 in total

1.  Processive translocation and DNA unwinding by individual RecBCD enzyme molecules.

Authors:  P R Bianco; L R Brewer; M Corzett; R Balhorn; Y Yeh; S C Kowalczykowski; R J Baskin
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

2.  X-ray structure of a protein-conducting channel.

Authors:  Bert Van den Berg; William M Clemons; Ian Collinson; Yorgo Modis; Enno Hartmann; Stephen C Harrison; Tom A Rapoport
Journal:  Nature       Date:  2003-12-03       Impact factor: 49.962

3.  SecA supports a constant rate of preprotein translocation.

Authors:  Danuta Tomkiewicz; Nico Nouwen; Ruud van Leeuwen; Sander Tans; Arnold J M Driessen
Journal:  J Biol Chem       Date:  2006-04-06       Impact factor: 5.157

4.  Energy transduction in protein transport and the ATP hydrolytic cycle of SecA.

Authors:  Alice Robson; Vicki A M Gold; Skye Hodson; Anthony R Clarke; Ian Collinson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-09       Impact factor: 11.205

5.  Signal peptides are allosteric activators of the protein translocase.

Authors:  Giorgos Gouridis; Spyridoula Karamanou; Ioannis Gelis; Charalampos G Kalodimos; Anastassios Economou
Journal:  Nature       Date:  2009-11-19       Impact factor: 49.962

6.  Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase.

Authors:  J A Ali; T M Lohman
Journal:  Science       Date:  1997-01-17       Impact factor: 47.728

7.  Continuous assays for DNA translocation using fluorescent triplex dissociation: application to type I restriction endonucleases.

Authors:  Sarah E McClelland; David T F Dryden; Mark D Szczelkun
Journal:  J Mol Biol       Date:  2005-05-13       Impact factor: 5.469

8.  General methods for analysis of sequential "n-step" kinetic mechanisms: application to single turnover kinetics of helicase-catalyzed DNA unwinding.

Authors:  Aaron L Lucius; Nasib K Maluf; Christopher J Fischer; Timothy M Lohman
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

9.  Disulfide bridge formation between SecY and a translocating polypeptide localizes the translocation pore to the center of SecY.

Authors:  Kurt S Cannon; Eran Or; William M Clemons; Yoko Shibata; Tom A Rapoport
Journal:  J Cell Biol       Date:  2005-04-25       Impact factor: 10.539

10.  ATP-induced asymmetric pre-protein folding as a driver of protein translocation through the Sec machinery.

Authors:  Robin A Corey; Zainab Ahdash; Anokhi Shah; Euan Pyle; William J Allen; Tomas Fessl; Janet E Lovett; Argyris Politis; Ian Collinson
Journal:  Elife       Date:  2019-01-02       Impact factor: 8.140

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  7 in total

1.  Towards a molecular mechanism underlying mitochondrial protein import through the TOM and TIM23 complexes.

Authors:  Holly C Ford; William J Allen; Gonçalo C Pereira; Xia Liu; Mark Simon Dillingham; Ian Collinson
Journal:  Elife       Date:  2022-06-08       Impact factor: 8.713

2.  Ribosome profiling reveals multiple roles of SecA in cotranslational protein export.

Authors:  Zikun Zhu; Shuai Wang; Shu-Ou Shan
Journal:  Nat Commun       Date:  2022-06-13       Impact factor: 17.694

Review 3.  The Dynamic SecYEG Translocon.

Authors:  Julia Oswald; Robert Njenga; Ana Natriashvili; Pinku Sarmah; Hans-Georg Koch
Journal:  Front Mol Biosci       Date:  2021-04-15

Review 4.  Recent Advancements in Tracking Bacterial Effector Protein Translocation.

Authors:  Julie Braet; Dominiek Catteeuw; Petra Van Damme
Journal:  Microorganisms       Date:  2022-01-24

5.  Rate-limiting transport of positively charged arginine residues through the Sec-machinery is integral to the mechanism of protein secretion.

Authors:  William J Allen; Robin A Corey; Daniel W Watkins; A Sofia F Oliveira; Kiel Hards; Gregory M Cook; Ian Collinson
Journal:  Elife       Date:  2022-04-29       Impact factor: 8.713

Review 6.  Bacterial Signal Peptides- Navigating the Journey of Proteins.

Authors:  Sharbani Kaushik; Haoze He; Ross E Dalbey
Journal:  Front Physiol       Date:  2022-07-26       Impact factor: 4.755

7.  Tracking bacterial effector protein delivery into host cells.

Authors:  Timothy L Cover
Journal:  Mol Microbiol       Date:  2021-07-28       Impact factor: 3.979

  7 in total

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