Literature DB >> 24441471

Single-molecule site-specific detection of protein phosphorylation with a nanopore.

Christian B Rosen1, David Rodriguez-Larrea2, Hagan Bayley3.   

Abstract

We demonstrate single-molecule, site-specific detection of protein phosphorylation with protein nanopore technology. A model protein, thioredoxin, was phosphorylated at two adjacent sites. Analysis of the ionic current amplitude and noise, as the protein unfolds and moves through an α-hemolysin pore, enables the distinction between unphosphorylated, monophosphorylated and diphosphorylated variants. Our results provide a step toward nanopore proteomics.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24441471      PMCID: PMC4391620          DOI: 10.1038/nbt.2799

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  47 in total

1.  Simultaneous stochastic sensing of divalent metal ions.

Authors:  O Braha; L Q Gu; L Zhou; X Lu; S Cheley; H Bayley
Journal:  Nat Biotechnol       Date:  2000-09       Impact factor: 54.908

Review 2.  Current two-dimensional electrophoresis technology for proteomics.

Authors:  Angelika Görg; Walter Weiss; Michael J Dunn
Journal:  Proteomics       Date:  2004-12       Impact factor: 3.984

3.  Wild type, mutant protein unfolding and phase transition detected by single-nanopore recording.

Authors:  Céline Merstorf; Benjamin Cressiot; Manuela Pastoriza-Gallego; Abdelghani Oukhaled; Jean-Michel Betton; Loïc Auvray; Juan Pelta
Journal:  ACS Chem Biol       Date:  2012-02-02       Impact factor: 5.100

4.  Sequencing set to alter clinical landscape.

Authors:  Erika Check Hayden
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

5.  Genome sequencing. Search for pore-fection.

Authors:  Elizabeth Pennisi
Journal:  Science       Date:  2012-05-04       Impact factor: 47.728

Review 6.  Nanopore analytics: sensing of single molecules.

Authors:  Stefan Howorka; Zuzanna Siwy
Journal:  Chem Soc Rev       Date:  2009-06-15       Impact factor: 54.564

7.  Integrated proteomic analysis of post-translational modifications by serial enrichment.

Authors:  Philipp Mertins; Jana W Qiao; Jinal Patel; Namrata D Udeshi; Karl R Clauser; D R Mani; Michael W Burgess; Michael A Gillette; Jacob D Jaffe; Steven A Carr
Journal:  Nat Methods       Date:  2013-06-09       Impact factor: 28.547

8.  Unfoldase-mediated protein translocation through an α-hemolysin nanopore.

Authors:  Jeff Nivala; Douglas B Marks; Mark Akeson
Journal:  Nat Biotechnol       Date:  2013-02-03       Impact factor: 54.908

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database.

Authors:  George A Khoury; Richard C Baliban; Christodoulos A Floudas
Journal:  Sci Rep       Date:  2011-09-13       Impact factor: 4.379

View more
  62 in total

1.  SDS-assisted protein transport through solid-state nanopores.

Authors:  Laura Restrepo-Pérez; Shalini John; Aleksei Aksimentiev; Chirlmin Joo; Cees Dekker
Journal:  Nanoscale       Date:  2017-08-17       Impact factor: 7.790

Review 2.  Microfluidic approaches for isolation, detection, and characterization of extracellular vesicles: Current status and future directions.

Authors:  Shima Gholizadeh; Mohamed Shehata Draz; Maryam Zarghooni; Amir Sanati-Nezhad; Saeid Ghavami; Hadi Shafiee; Mohsen Akbari
Journal:  Biosens Bioelectron       Date:  2016-12-30       Impact factor: 10.618

3.  Remote Activation of a Nanopore for High-Performance Genetic Detection Using a pH Taxis-Mimicking Mechanism.

Authors:  Yong Wang; Kai Tian; Xiao Du; Rui-Cheng Shi; Li-Qun Gu
Journal:  Anal Chem       Date:  2017-12-04       Impact factor: 6.986

4.  Direct Sensing and Discrimination among Ubiquitin and Ubiquitin Chains Using Solid-State Nanopores.

Authors:  Iftach Nir; Diana Huttner; Amit Meller
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

5.  Protein fingerprinting with digital sequences of linear protein subsequence volumes: a computational study.

Authors:  G Sampath
Journal:  J Biosci       Date:  2019-06       Impact factor: 1.826

6.  Protein Motion and Configurations in a Form-Fitting Nanopore: Avidin in ClyA.

Authors:  Bo Lu; Chris Stokes; Monifa Fahie; Min Chen; Jene A Golovchenko; Lene Vestergaard Hau
Journal:  Biophys J       Date:  2018-08-04       Impact factor: 4.033

7.  Electrostatic Interactions between OmpG Nanopore and Analyte Protein Surface Can Distinguish between Glycosylated Isoforms.

Authors:  Monifa A Fahie; Min Chen
Journal:  J Phys Chem B       Date:  2015-07-30       Impact factor: 2.991

8.  Channel from bacterial virus T7 DNA packaging motor for the differentiation of peptides composed of a mixture of acidic and basic amino acids.

Authors:  Zhouxiang Ji; Peixuan Guo
Journal:  Biomaterials       Date:  2019-05-21       Impact factor: 12.479

9.  Nanopores sense protein modifications.

Authors:  Tal Nawy
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

10.  Oriented single directional insertion of nanochannel of bacteriophage SPP1 DNA packaging motor into lipid bilayer via polar hydrophobicity.

Authors:  Zhi Zhou; Zhouxiang Ji; Shaoying Wang; Farzin Haque; Peixuan Guo
Journal:  Biomaterials       Date:  2016-08-04       Impact factor: 12.479

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.