Literature DB >> 23749302

Integrated proteomic analysis of post-translational modifications by serial enrichment.

Philipp Mertins1, Jana W Qiao, Jinal Patel, Namrata D Udeshi, Karl R Clauser, D R Mani, Michael W Burgess, Michael A Gillette, Jacob D Jaffe, Steven A Carr.   

Abstract

We report a mass spectrometry-based method for the integrated analysis of protein expression, phosphorylation, ubiquitination and acetylation by serial enrichments of different post-translational modifications (SEPTM) from the same biological sample. This technology enabled quantitative analysis of nearly 8,000 proteins and more than 20,000 phosphorylation, 15,000 ubiquitination and 3,000 acetylation sites per experiment, generating a holistic view of cellular signal transduction pathways as exemplified by analysis of bortezomib-treated human leukemia cells.

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Year:  2013        PMID： 23749302      PMCID： PMC3943163          DOI： 10.1038/nmeth.2518

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  20 in total

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2.  Andromeda: a peptide search engine integrated into the MaxQuant environment.

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3.  A protocol on the use of titanium dioxide chromatography for phosphoproteomics.

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Journal:  Methods Mol Biol       Date:  2011

4.  Systematic and quantitative assessment of the ubiquitin-modified proteome.

Authors:  Woong Kim; Eric J Bennett; Edward L Huttlin; Ailan Guo; Jing Li; Anthony Possemato; Mathew E Sowa; Ramin Rad; John Rush; Michael J Comb; J Wade Harper; Steven P Gygi
Journal:  Mol Cell       Date:  2011-09-08       Impact factor: 17.970

5.  Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells.

Authors:  Yuexi Wang; Feng Yang; Marina A Gritsenko; Yingchun Wang; Therese Clauss; Tao Liu; Yufeng Shen; Matthew E Monroe; Daniel Lopez-Ferrer; Theresa Reno; Ronald J Moore; Richard L Klemke; David G Camp; Richard D Smith
Journal:  Proteomics       Date:  2011-04-18       Impact factor: 3.984

6.  Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.

Authors:  Guoqiang Xu; Jeremy S Paige; Samie R Jaffrey
Journal:  Nat Biotechnol       Date:  2010-07-18       Impact factor: 54.908

7.  Lysine acetylation targets protein complexes and co-regulates major cellular functions.

Authors:  Chunaram Choudhary; Chanchal Kumar; Florian Gnad; Michael L Nielsen; Michael Rehman; Tobias C Walther; Jesper V Olsen; Matthias Mann
Journal:  Science       Date:  2009-07-16       Impact factor: 47.728

8.  Magnetic bead processor for rapid evaluation and optimization of parameters for phosphopeptide enrichment.

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Journal:  Anal Chem       Date:  2009-06-01       Impact factor: 6.986

9.  Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis.

Authors:  Jesper V Olsen; Michiel Vermeulen; Anna Santamaria; Chanchal Kumar; Martin L Miller; Lars J Jensen; Florian Gnad; Jürgen Cox; Thomas S Jensen; Erich A Nigg; Søren Brunak; Matthias Mann
Journal:  Sci Signal       Date:  2010-01-12       Impact factor: 8.192

10.  The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry.

Authors:  Judit Villén; Steven P Gygi
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491
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  243 in total

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Journal:  Elife       Date:  2020-06-18       Impact factor: 8.140

3.  Mapping Post-Translational Modifications of de Novo Purine Biosynthetic Enzymes: Implications for Pathway Regulation.

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Review 4.  Post-translational modifications of Hsp90 and translating the chaperone code.

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5.  Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury.

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Journal:  Mol Cell Proteomics       Date:  2015-02-27       Impact factor: 5.911

6.  Translation Initiation Site Profiling Reveals Widespread Synthesis of Non-AUG-Initiated Protein Isoforms in Yeast.

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Review 7.  Global and site-specific analysis of protein glycosylation in complex biological systems with Mass Spectrometry.

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Review 8.  Emerging Affinity-Based Proteomic Technologies for Large-Scale Plasma Profiling in Cardiovascular Disease.

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9.  Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project.

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10.  Insulin-induced de novo lipid synthesis occurs mainly via mTOR-dependent regulation of proteostasis of SREBP-1c.

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Journal:  Mol Cell Biochem       Date:  2019-09-20       Impact factor: 3.396
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