Literature DB >> 24428193

Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams.

Linda Wilhelm1, Katharina Besemer, Christina Fasching, Tim Urich, Gabriel A Singer, Christopher Quince, Tom J Battin.   

Abstract

Glaciers harbour diverse microorganisms, which upon ice melt can be released downstream. In glacier-fed streams microorganisms can attach to stones or sediments to form benthic biofilms. We used 454-pyrosequencing to explore the bulk (16S rDNA) and putatively active (16S rRNA) microbial communities of stone and sediment biofilms across 26 glacier-fed streams. We found differences in community composition between bulk and active communities among streams and a stronger congruence between biofilm types. Relative abundances of rRNA and rDNA were positively correlated across different taxa and taxonomic levels, but at lower taxonomic levels, the higher abundance in either the active or the bulk communities became more apparent. Here, environmental variables played a minor role in structuring active communities. However, we found a large number of rare taxa with higher relative abundances in rRNA compared with rDNA. This suggests that rare taxa contribute disproportionately to microbial community dynamics in glacier-fed streams. Our findings propose that high community turnover, where taxa repeatedly enter and leave the 'seed bank', contributes to the maintenance of microbial biodiversity in harsh ecosystems with continuous environmental perturbations, such as glacier-fed streams.
© 2014 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24428193     DOI: 10.1111/1462-2920.12392

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  31 in total

1.  Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity.

Authors:  Eric Capo; Didier Debroas; Fabien Arnaud; Isabelle Domaizon
Journal:  Microb Ecol       Date:  2015-05-29       Impact factor: 4.552

Review 2.  Ecology and exploration of the rare biosphere.

Authors:  Michael D J Lynch; Josh D Neufeld
Journal:  Nat Rev Microbiol       Date:  2015-03-02       Impact factor: 60.633

3.  Microbial connectivity and sorting in a High Arctic watershed.

Authors:  Jérôme Comte; Alexander I Culley; Connie Lovejoy; Warwick F Vincent
Journal:  ISME J       Date:  2018-08-07       Impact factor: 10.302

4.  Rare taxa maintain microbial diversity and contribute to terrestrial community dynamics throughout bark beetle infestation.

Authors:  Kristin M Mikkelson; Chelsea Bokman; Jonathan O Sharp
Journal:  Appl Environ Microbiol       Date:  2016-09-16       Impact factor: 4.792

5.  Glacier shrinkage driving global changes in downstream systems.

Authors:  Alexander M Milner; Kieran Khamis; Tom J Battin; John E Brittain; Nicholas E Barrand; Leopold Füreder; Sophie Cauvy-Fraunié; Gísli Már Gíslason; Dean Jacobsen; David M Hannah; Andrew J Hodson; Eran Hood; Valeria Lencioni; Jón S Ólafsson; Christopher T Robinson; Martyn Tranter; Lee E Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-05       Impact factor: 11.205

6.  Soil microbial species loss affects plant biomass and survival of an introduced bacterial strain, but not inducible plant defences.

Authors:  Viola Kurm; Wim H van der Putten; Ana Pineda; W H Gera Hol
Journal:  Ann Bot       Date:  2018-02-12       Impact factor: 4.357

7.  Optimised biomolecular extraction for metagenomic analysis of microbial biofilms from high-mountain streams.

Authors:  Susheel Bhanu Busi; Paraskevi Pramateftaki; Jade Brandani; Stilianos Fodelianakis; Hannes Peter; Rashi Halder; Paul Wilmes; Tom J Battin
Journal:  PeerJ       Date:  2020-10-27       Impact factor: 2.984

8.  Deciphering associations between dissolved organic molecules and bacterial communities in a pelagic marine system.

Authors:  Helena Osterholz; Gabriel Singer; Bernd Wemheuer; Rolf Daniel; Meinhard Simon; Jutta Niggemann; Thorsten Dittmar
Journal:  ISME J       Date:  2016-01-22       Impact factor: 10.302

9.  Analysis of airborne microbial communities using 16S ribosomal RNA: Potential bias due to air sampling stress.

Authors:  Huajun Zhen; Valdis Krumins; Donna E Fennell; Gediminas Mainelis
Journal:  Sci Total Environ       Date:  2017-11-01       Impact factor: 7.963

Review 10.  Biodiversity, community structure and function of biofilms in stream ecosystems.

Authors:  Katharina Besemer
Journal:  Res Microbiol       Date:  2015-05-29       Impact factor: 3.992

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.