Literature DB >> 26027773

Biodiversity, community structure and function of biofilms in stream ecosystems.

Katharina Besemer1.   

Abstract

Multi-species, surface-attached biofilms often dominate microbial life in streams and rivers, where they contribute substantially to biogeochemical processes. The microbial diversity of natural biofilms is huge, and may have important implications for the functioning of aquatic environments and the ecosystem services they provide. Yet the causes and consequences of biofilm biodiversity remain insufficiently understood. This review aims to give an overview of current knowledge on the distribution of stream biofilm biodiversity, the mechanisms generating biodiversity patterns and the relationship between biofilm biodiversity and ecosystem functioning.
Copyright © 2015 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Entities:  

Keywords:  Biofilm; Microbial diversity; Microbial ecology; Stream ecosystems

Mesh:

Year:  2015        PMID: 26027773      PMCID: PMC4601154          DOI: 10.1016/j.resmic.2015.05.006

Source DB:  PubMed          Journal:  Res Microbiol        ISSN: 0923-2508            Impact factor:   3.992


  49 in total

Review 1.  Biofilms as complex differentiated communities.

Authors:  P Stoodley; K Sauer; D G Davies; J W Costerton
Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500

Review 2.  Changes through time: integrating microorganisms into the study of succession.

Authors:  Noah Fierer; Diana Nemergut; Rob Knight; Joseph M Craine
Journal:  Res Microbiol       Date:  2010-06-22       Impact factor: 3.992

Review 3.  Species-energy relationships at the macroecological scale: a review of the mechanisms.

Authors:  Karl L Evans; Philip H Warren; Kevin J Gaston
Journal:  Biol Rev Camb Philos Soc       Date:  2005-02

4.  Large-scale variation in subsurface stream biofilms: a cross-regional comparison of metabolic function and community similarity.

Authors:  S Findlay; R L Sinsabaugh
Journal:  Microb Ecol       Date:  2006-08-15       Impact factor: 4.552

Review 5.  A guide to the natural history of freshwater lake bacteria.

Authors:  Ryan J Newton; Stuart E Jones; Alexander Eiler; Katherine D McMahon; Stefan Bertilsson
Journal:  Microbiol Mol Biol Rev       Date:  2011-03       Impact factor: 11.056

Review 6.  Biostabilization of cohesive sediments: revisiting the role of abiotic conditions, physiology and diversity of microbes, polymeric secretion, and biofilm architecture.

Authors:  S U Gerbersdorf; S Wieprecht
Journal:  Geobiology       Date:  2014-10-23       Impact factor: 4.407

7.  Shifts in microbial community structure and function in light- and dark-grown biofilms driven by warming.

Authors:  Anna M Romaní; Carles M Borrego; Verónica Díaz-Villanueva; Anna Freixa; Frederic Gich; Irene Ylla
Journal:  Environ Microbiol       Date:  2014-03-25       Impact factor: 5.491

8.  Biodiversity improves water quality through niche partitioning.

Authors:  Bradley J Cardinale
Journal:  Nature       Date:  2011-04-07       Impact factor: 49.962

9.  Biofilm structure and function and possible implications for riverine DOC dynamics.

Authors:  A M Romaní; H Guasch; I Muñoz; J Ruana; E Vilalta; T Schwartz; F Emtiazi; S Sabater
Journal:  Microb Ecol       Date:  2003-12-23       Impact factor: 4.552

10.  Physical heterogeneity increases biofilm resource use and its molecular diversity in stream mesocosms.

Authors:  Gabriel Singer; Katharina Besemer; Philippe Schmitt-Kopplin; Iris Hödl; Tom J Battin
Journal:  PLoS One       Date:  2010-04-01       Impact factor: 3.240

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  20 in total

1.  Suitability and setup of next-generation sequencing-based method for taxonomic characterization of aquatic microbial biofilm.

Authors:  Tomas Bakal; Jiri Janata; Lenka Sabova; Roman Grabic; Vladimir Zlabek; Lucie Najmanova
Journal:  Folia Microbiol (Praha)       Date:  2018-06-16       Impact factor: 2.099

2.  Patterns of bacterial biodiversity in the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica.

Authors:  David J Van Horn; Caitlin R Wolf; Daniel R Colman; Xiaoben Jiang; Tyler J Kohler; Diane M McKnight; Lee F Stanish; Terrill Yazzie; Cristina D Takacs-Vesbach
Journal:  FEMS Microbiol Ecol       Date:  2016-08-05       Impact factor: 4.194

3.  Developing Indicators of Nutrient Pollution in Streams Using 16S rRNA Gene Metabarcoding of Periphyton-Associated Bacteria.

Authors:  Erik M Pilgrim; Nathan J Smucker; Huiyun Wu; John Martinson; Christopher T Nietch; Marirosa Molina; John A Darling; Brent R Johnson
Journal:  Water (Basel)       Date:  2022-07-30       Impact factor: 3.530

4.  Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France.

Authors:  Anouk Zancarini; Isidora Echenique-Subiabre; Didier Debroas; Najwa Taïb; Catherine Quiblier; Jean-François Humbert
Journal:  Sci Rep       Date:  2017-06-28       Impact factor: 4.379

5.  Metagenomics analysis of bacterial structure communities within natural biofilm.

Authors:  Bahaa A Hemdan; Mohamed Azab El-Liethy; M E I ElMahdy; Gamila E El-Taweel
Journal:  Heliyon       Date:  2019-08-23

6.  Draft Genome Sequences of Phenotypically Distinct Janthinobacterium sp. Isolates Cultured from the Hudson Valley Watershed.

Authors:  Alexandra M Bettina; Georgia Doing; Kelsey O'Brien; Gabriel G Perron; Brooke A Jude
Journal:  Genome Announc       Date:  2018-01-18

7.  Proteomic Insights into Starvation of Nitrogen-Replete Cells of Nostoc sp. PCC 7120 under β-N-Methylamino-L-Alanine (BMAA) Treatment.

Authors:  Olga A Koksharova; Ivan O Butenko; Olga V Pobeguts; Nina A Safronova; Vadim M Govorun
Journal:  Toxins (Basel)       Date:  2020-06-04       Impact factor: 4.546

8.  A simple method to produce Synechocystis PCC6803 biofilm under laboratory conditions for electron microscopic and functional studies.

Authors:  Ivy Mallick; Prithwiraj Kirtania; Milán Szabó; Faiza Bashir; Ildiko Domonkos; Peter B Kós; Imre Vass
Journal:  PLoS One       Date:  2020-07-30       Impact factor: 3.240

9.  Multiple processes acting from local to large geographical scales shape bacterial communities associated with Phormidium (cyanobacteria) biofilms in French and New Zealand rivers.

Authors:  Isidora Echenique-Subiabre; Anouk Zancarini; Mark W Heath; Susanna A Wood; Catherine Quiblier; Jean-François Humbert
Journal:  Sci Rep       Date:  2018-09-26       Impact factor: 4.379

10.  Source Community and Assembly Processes Affect the Efficiency of Microbial Microcystin Degradation on Drinking Water Filtration Membranes.

Authors:  Marisa O D Silva; Peter Desmond; Nicolas Derlon; Eberhard Morgenroth; Jakob Pernthaler
Journal:  Front Microbiol       Date:  2019-04-18       Impact factor: 5.640

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