Literature DB >> 26800236

Deciphering associations between dissolved organic molecules and bacterial communities in a pelagic marine system.

Helena Osterholz1, Gabriel Singer2,3, Bernd Wemheuer4, Rolf Daniel4, Meinhard Simon1, Jutta Niggemann1, Thorsten Dittmar1.   

Abstract

Dissolved organic matter (DOM) is the main substrate and energy source for heterotrophic bacterioplankton. To understand the interactions between DOM and the bacterial community (BC), it is important to identify the key factors on both sides in detail, chemically distinct moieties in DOM and the various bacterial taxa. Next-generation sequencing facilitates the classification of millions of reads of environmental DNA and RNA amplicons and ultrahigh-resolution mass spectrometry yields up to 10 000 DOM molecular formulae in a marine water sample. Linking this detailed biological and chemical information is a crucial first step toward a mechanistic understanding of the role of microorganisms in the marine carbon cycle. In this study, we interpreted the complex microbiological and molecular information via a novel combination of multivariate statistics. We were able to reveal distinct relationships between the key factors of organic matter cycling along a latitudinal transect across the North Sea. Total BC and DOM composition were mainly driven by mixing of distinct water masses and presumably retain their respective terrigenous imprint on similar timescales on their way through the North Sea. The active microbial community, however, was rather influenced by local events and correlated with specific DOM molecular formulae indicative of compounds that are easily degradable. These trends were most pronounced on the highest resolved level, that is, operationally defined 'species', reflecting the functional diversity of microorganisms at high taxonomic resolution.

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Year:  2016        PMID: 26800236      PMCID: PMC4918438          DOI: 10.1038/ismej.2015.231

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  38 in total

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Authors:  L Riemann; G F Steward; F Azam
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

2.  Dormancy contributes to the maintenance of microbial diversity.

Authors:  Stuart E Jones; Jay T Lennon
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

3.  Trait evolution, community assembly, and the phylogenetic structure of ecological communities.

Authors:  Nathan J B Kraft; William K Cornwell; Campbell O Webb; David D Ackerly
Journal:  Am Nat       Date:  2007-06-05       Impact factor: 3.926

4.  Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.

Authors:  Hanno Teeling; Bernhard M Fuchs; Dörte Becher; Christine Klockow; Antje Gardebrecht; Christin M Bennke; Mariette Kassabgy; Sixing Huang; Alexander J Mann; Jost Waldmann; Marc Weber; Anna Klindworth; Andreas Otto; Jana Lange; Jörg Bernhardt; Christine Reinsch; Michael Hecker; Jörg Peplies; Frank D Bockelmann; Ulrich Callies; Gunnar Gerdts; Antje Wichels; Karen H Wiltshire; Frank Oliver Glöckner; Thomas Schweder; Rudolf Amann
Journal:  Science       Date:  2012-05-04       Impact factor: 47.728

5.  A latitudinal diversity gradient in planktonic marine bacteria.

Authors:  Jed A Fuhrman; Joshua A Steele; Ian Hewson; Michael S Schwalbach; Mark V Brown; Jessica L Green; James H Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-28       Impact factor: 11.205

6.  Activity of abundant and rare bacteria in a coastal ocean.

Authors:  Barbara J Campbell; Liying Yu; John F Heidelberg; David L Kirchman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-18       Impact factor: 11.205

7.  Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data.

Authors:  Pierre Legendre; Marie-Josée Fortin
Journal:  Mol Ecol Resour       Date:  2010-05-17       Impact factor: 7.090

8.  Uncoupling of bacterial and terrigenous dissolved organic matter dynamics in decomposition experiments.

Authors:  Daniel P R Herlemann; Marcus Manecki; Christian Meeske; Falk Pollehne; Matthias Labrenz; Detlef Schulz-Bull; Thorsten Dittmar; Klaus Jürgens
Journal:  PLoS One       Date:  2014-04-09       Impact factor: 3.240

9.  Microbial control of the dark end of the biological pump.

Authors:  Gerhard J Herndl; Thomas Reinthaler
Journal:  Nat Geosci       Date:  2013-09-01       Impact factor: 16.908

10.  RNA-based assessment of diversity and composition of active archaeal communities in the German Bight.

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Journal:  Archaea       Date:  2012-11-12       Impact factor: 3.273

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  26 in total

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Authors:  Sara Billerbeck; Bernd Wemheuer; Sonja Voget; Anja Poehlein; Helge-Ansgar Giebel; Thorsten Brinkhoff; Lone Gram; Wade H Jeffrey; Rolf Daniel; Meinhard Simon
Journal:  Nat Microbiol       Date:  2016-05-16       Impact factor: 17.745

2.  Chemical and microbial diversity covary in fresh water to influence ecosystem functioning.

Authors:  Andrew J Tanentzap; Amelia Fitch; Chloe Orland; Erik J S Emilson; Kurt M Yakimovich; Helena Osterholz; Thorsten Dittmar
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-18       Impact factor: 11.205

3.  Impact of Quorum Sensing and Tropodithietic Acid Production on the Exometabolome of Phaeobacter inhibens.

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Journal:  Front Microbiol       Date:  2022-06-21       Impact factor: 6.064

4.  Ecological networks of dissolved organic matter and microorganisms under global change.

Authors:  Ang Hu; Mira Choi; Andrew J Tanentzap; Jinfu Liu; Kyoung-Soon Jang; Jay T Lennon; Yongqin Liu; Janne Soininen; Xiancai Lu; Yunlin Zhang; Ji Shen; Jianjun Wang
Journal:  Nat Commun       Date:  2022-06-23       Impact factor: 17.694

5.  Resource heterogeneity structures aquatic bacterial communities.

Authors:  Mario E Muscarella; Claudia M Boot; Corey D Broeckling; Jay T Lennon
Journal:  ISME J       Date:  2019-05-03       Impact factor: 10.302

6.  Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater.

Authors:  Daniel Petras; Jeremiah J Minich; Lucia B Cancelada; Ralph R Torres; Emily Kunselman; Mingxun Wang; Margot E White; Eric E Allen; Kimberly A Prather; Lihini I Aluwihare; Pieter C Dorrestein
Journal:  Chemosphere       Date:  2021-01-02       Impact factor: 7.086

7.  Linking Microbial Population Succession and DOM Molecular Changes in Synechococcus-Derived Organic Matter Addition Incubation.

Authors:  Yu Wang; Rui Xie; Yuan Shen; Ruanhong Cai; Chen He; Qi Chen; Weidong Guo; Quan Shi; Nianzhi Jiao; Qiang Zheng
Journal:  Microbiol Spectr       Date:  2022-04-05

8.  Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level.

Authors:  Judith Lucas; Irina Koester; Antje Wichels; Jutta Niggemann; Thorsten Dittmar; Ulrich Callies; Karen H Wiltshire; Gunnar Gerdts
Journal:  Front Microbiol       Date:  2016-03-15       Impact factor: 5.640

9.  Impacts of Fertilization Regimes on Arbuscular Mycorrhizal Fungal (AMF) Community Composition Were Correlated with Organic Matter Composition in Maize Rhizosphere Soil.

Authors:  Chen Zhu; Ning Ling; Junjie Guo; Min Wang; Shiwei Guo; Qirong Shen
Journal:  Front Microbiol       Date:  2016-11-16       Impact factor: 5.640

10.  Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters.

Authors:  Celine C Lesaulnier; Craig W Herbold; Claus Pelikan; David Berry; Cédric Gérard; Xavier Le Coz; Sophie Gagnot; Jutta Niggemann; Thorsten Dittmar; Gabriel A Singer; Alexander Loy
Journal:  Microbiome       Date:  2017-09-22       Impact factor: 14.650

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