Literature DB >> 24421312

A frustrated binding interface for intrinsically disordered proteins.

Per Jemth1, Xin Mu, Åke Engström, Jakob Dogan.   

Abstract

Intrinsically disordered proteins are very common in the eukaryotic proteome, and many of them are associated with diseases. Disordered proteins usually undergo a coupled binding and folding reaction and often interact with many different binding partners. Using double mutant cycles, we mapped the energy landscape of the binding interface for two interacting disordered domains and found it to be largely suboptimal in terms of interaction free energies, despite relatively high affinity. These data depict a frustrated energy landscape for interactions involving intrinsically disordered proteins, which is likely a result of their functional promiscuity.

Entities:  

Keywords:  Intrinsically Disordered Proteins; Kinetics; Protein Domains; Protein Engineering; Protein-Protein Interactions

Mesh:

Substances:

Year:  2014        PMID: 24421312      PMCID: PMC3937629          DOI: 10.1074/jbc.M113.537068

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  38 in total

1.  A small domain of CBP/p300 binds diverse proteins: solution structure and functional studies.

Authors:  C H Lin; B J Hare; G Wagner; S C Harrison; T Maniatis; E Fraenkel
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

2.  A detailed thermodynamic analysis of ras/effector complex interfaces.

Authors:  Christina Kiel; Luis Serrano; Christian Herrmann
Journal:  J Mol Biol       Date:  2004-07-23       Impact factor: 5.469

3.  Analysis of binding interactions in an idiotope-antiidiotope protein-protein complex by double mutant cycles.

Authors:  E R Goldman; W Dall'Acqua; B C Braden; R A Mariuzza
Journal:  Biochemistry       Date:  1997-01-07       Impact factor: 3.162

4.  The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding.

Authors:  L S Itzhaki; D E Otzen; A R Fersht
Journal:  J Mol Biol       Date:  1995-11-24       Impact factor: 5.469

5.  Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles.

Authors:  G Schreiber; A R Fersht
Journal:  J Mol Biol       Date:  1995-04-28       Impact factor: 5.469

6.  The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus).

Authors:  P J Carter; G Winter; A J Wilkinson; A R Fersht
Journal:  Cell       Date:  1984-10       Impact factor: 41.582

7.  Spin glasses and the statistical mechanics of protein folding.

Authors:  J D Bryngelson; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

8.  A Conserved alpha-helical motif mediates the binding of diverse nuclear proteins to the SRC1 interaction domain of CBP.

Authors:  Sachiko Matsuda; Janet C Harries; Maria Viskaduraki; Philip J F Troke; Karin B Kindle; Colm Ryan; David M Heery
Journal:  J Biol Chem       Date:  2004-01-13       Impact factor: 5.157

9.  Packing, specificity, and mutability at the binding interface between the p160 coactivator and CREB-binding protein.

Authors:  Stephen J Demarest; Songpon Deechongkit; H Jane Dyson; Ronald M Evans; Peter E Wright
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

10.  Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners.

Authors:  Christopher J Oldfield; Jingwei Meng; Jack Y Yang; Mary Qu Yang; Vladimir N Uversky; A Keith Dunker
Journal:  BMC Genomics       Date:  2008       Impact factor: 3.969

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  20 in total

Review 1.  Intrinsically disordered proteins in crowded milieu: when chaos prevails within the cellular gumbo.

Authors:  Alexander V Fonin; April L Darling; Irina M Kuznetsova; Konstantin K Turoverov; Vladimir N Uversky
Journal:  Cell Mol Life Sci       Date:  2018-07-31       Impact factor: 9.261

2.  Adaptation of the bound intrinsically disordered protein YAP to mutations at the YAP:TEAD interface.

Authors:  Yannick Mesrouze; Fedir Bokhovchuk; Aude Izaac; Marco Meyerhofer; Catherine Zimmermann; Patrizia Fontana; Tobias Schmelzle; Dirk Erdmann; Pascal Furet; Joerg Kallen; Patrick Chène
Journal:  Protein Sci       Date:  2018-10       Impact factor: 6.725

Review 3.  Templated folding of intrinsically disordered proteins.

Authors:  Angelo Toto; Francesca Malagrinò; Lorenzo Visconti; Francesca Troilo; Livia Pagano; Maurizio Brunori; Per Jemth; Stefano Gianni
Journal:  J Biol Chem       Date:  2020-04-06       Impact factor: 5.157

4.  Mapping the transition state for a binding reaction between ancient intrinsically disordered proteins.

Authors:  Elin Karlsson; Cristina Paissoni; Amanda M Erkelens; Zeinab A Tehranizadeh; Frieda A Sorgenfrei; Eva Andersson; Weihua Ye; Carlo Camilloni; Per Jemth
Journal:  J Biol Chem       Date:  2020-10-16       Impact factor: 5.157

5.  Quarterly intrinsic disorder digest (January-February-March, 2014).

Authors:  Shelly DeForte; Krishna D Reddy; Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2016-02-12

6.  The intrinsically disordered regions of the Drosophila melanogaster Hox protein ultrabithorax select interacting proteins based on partner topology.

Authors:  Hao-Ching Hsiao; Kim L Gonzalez; Daniel J Catanese; Kristopher E Jordy; Kathleen S Matthews; Sarah E Bondos
Journal:  PLoS One       Date:  2014-10-06       Impact factor: 3.240

7.  Intrinsically Disordered Transactivation Domains Bind to TAZ1 Domain of CBP via Diverse Mechanisms.

Authors:  Meng Gao; Jing Yang; Sen Liu; Zhengding Su; Yongqi Huang
Journal:  Biophys J       Date:  2019-08-29       Impact factor: 4.033

8.  The lifestyle switch protein Bd0108 of Bdellovibrio bacteriovorus is an intrinsically disordered protein.

Authors:  Gerd Prehna; Benjamin E Ramirez; Andrew L Lovering
Journal:  PLoS One       Date:  2014-12-16       Impact factor: 3.240

9.  Molecular Recognition by Templated Folding of an Intrinsically Disordered Protein.

Authors:  Angelo Toto; Carlo Camilloni; Rajanish Giri; Maurizio Brunori; Michele Vendruscolo; Stefano Gianni
Journal:  Sci Rep       Date:  2016-02-25       Impact factor: 4.379

10.  Dissection of the interaction between the intrinsically disordered YAP protein and the transcription factor TEAD.

Authors:  Yannick Mesrouze; Fedir Bokhovchuk; Marco Meyerhofer; Patrizia Fontana; Catherine Zimmermann; Typhaine Martin; Clara Delaunay; Dirk Erdmann; Tobias Schmelzle; Patrick Chène
Journal:  Elife       Date:  2017-04-21       Impact factor: 8.140

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