Literature DB >> 24414837

Regulation of ISWI chromatin remodelling activity.

Maria Toto1, Giulia D'Angelo, Davide F V Corona.   

Abstract

The packaging of the eukaryotic genome into chromatin facilitates the storage of the genetic information within the nucleus, but prevents the access to the underlying DNA sequences. Structural changes in chromatin are mediated by several mechanisms. Among them, ATP-dependent remodelling complexes belonging to ISWI family provides one of the best examples that eukaryotic cells evolved to finely regulate these changes. ISWI-containing complexes use the energy derived from ATP hydrolysis to rearrange nucleosomes on chromatin in order to favour specific nuclear reactions. The combination of regulatory nuclear factors associated with the ATPase subunit as well as its modulation by specific histone modifications, specializes the nuclear function of each ISWI-containing complex. Here we review the different ways by which ISWI enzymatic activity can be modulated and regulated in the nucleus of eukaryotic cells.

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Year:  2014        PMID: 24414837     DOI: 10.1007/s00412-013-0447-4

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  90 in total

1.  Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling.

Authors:  Mohamedi N Kagalwala; Benjamin J Glaus; Weiwei Dang; Martin Zofall; Blaine Bartholomew
Journal:  EMBO J       Date:  2004-05-06       Impact factor: 11.598

Review 2.  Multiple roles for ISWI in transcription, chromosome organization and DNA replication.

Authors:  Davide F V Corona; John W Tamkun
Journal:  Biochim Biophys Acta       Date:  2004-03-15

3.  Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner.

Authors:  Yuri M Moshkin; Gillian E Chalkley; Tsung Wai Kan; B Ashok Reddy; Zeliha Ozgur; Wilfred F J van Ijcken; Dick H W Dekkers; Jeroen A Demmers; Andrew A Travers; C Peter Verrijzer
Journal:  Mol Cell Biol       Date:  2011-11-28       Impact factor: 4.272

4.  The histone fold subunits of Drosophila CHRAC facilitate nucleosome sliding through dynamic DNA interactions.

Authors:  Klaus F Hartlepp; Carlos Fernández-Tornero; Anton Eberharter; Tim Grüne; Christoph W Müller; Peter B Becker
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

5.  A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling.

Authors:  Ralf Strohner; Malte Wachsmuth; Karoline Dachauer; Jacek Mazurkiewicz; Julia Hochstatter; Karsten Rippe; Gernot Längst
Journal:  Nat Struct Mol Biol       Date:  2005-07-17       Impact factor: 15.369

Review 6.  Patterning chromatin: form and function for H2A.Z variant nucleosomes.

Authors:  Ryan M Raisner; Hiten D Madhani
Journal:  Curr Opin Genet Dev       Date:  2006-02-28       Impact factor: 5.578

7.  Domain architecture of the catalytic subunit in the ISW2-nucleosome complex.

Authors:  Weiwei Dang; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2007-10-01       Impact factor: 4.272

8.  Identification and characterization of ToRC, a novel ISWI-containing ATP-dependent chromatin assembly complex.

Authors:  Alexander V Emelyanov; Elena Vershilova; Maria A Ignatyeva; Daniil K Pokrovsky; Xingwu Lu; Alexander Y Konev; Dmitry V Fyodorov
Journal:  Genes Dev       Date:  2012-03-15       Impact factor: 11.361

9.  Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF.

Authors:  A Hamiche; J G Kang; C Dennis; H Xiao; C Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

10.  Deposition of histone variant H2A.Z within gene bodies regulates responsive genes.

Authors:  Devin Coleman-Derr; Daniel Zilberman
Journal:  PLoS Genet       Date:  2012-10-11       Impact factor: 5.917

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  12 in total

1.  Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis.

Authors:  Lian-Mei Tan; Rui Liu; Bo-Wen Gu; Cui-Jun Zhang; Jinyan Luo; Jing Guo; Yuhua Wang; Lixian Chen; Xuan Du; Sisi Li; Chang-Rong Shao; Yin-Na Su; Xue-Wei Cai; Rong-Nan Lin; Lin Li; She Chen; Jiamu Du; Xin-Jian He
Journal:  Plant Cell       Date:  2020-04-30       Impact factor: 11.277

Review 2.  Chromatin remodelers: We are the drivers!!

Authors:  Monica Tyagi; Nasir Imam; Kirtika Verma; Ashok K Patel
Journal:  Nucleus       Date:  2016-07-18       Impact factor: 4.197

Review 3.  The ISWI remodeler in plants: protein complexes, biochemical functions, and developmental roles.

Authors:  Dongjie Li; Jie Liu; Wu Liu; Guang Li; Zhongnan Yang; Peng Qin; Lin Xu
Journal:  Chromosoma       Date:  2017-02-17       Impact factor: 4.316

4.  Systematic histone H4 replacement in Arabidopsis thaliana reveals a role for H4R17 in regulating flowering time.

Authors:  Emma Tung Corcoran; Chantal LeBlanc; Yi-Chun Huang; Mia Arias Tsang; Anthony Sarkiss; Yuzhao Hu; Ullas V Pedmale; Yannick Jacob
Journal:  Plant Cell       Date:  2022-09-27       Impact factor: 12.085

Review 5.  An Overview of Chromatin-Regulating Proteins in Cells.

Authors:  Pingyu Zhang; Keila Torres; Xiuping Liu; Chang-Gong Liu; Raphael E Pollock
Journal:  Curr Protein Pept Sci       Date:  2016       Impact factor: 3.272

Review 6.  The RanGTP Pathway: From Nucleo-Cytoplasmic Transport to Spindle Assembly and Beyond.

Authors:  Tommaso Cavazza; Isabelle Vernos
Journal:  Front Cell Dev Biol       Date:  2016-01-11

7.  Identification of the ISWI Chromatin Remodeling Complex of the Early Branching Eukaryote Trypanosoma brucei.

Authors:  Tara M Stanne; Mani Shankar Narayanan; Sophie Ridewood; Alexandra Ling; Kathrin Witmer; Manish Kushwaha; Simone Wiesler; Bill Wickstead; Jennifer Wood; Gloria Rudenko
Journal:  J Biol Chem       Date:  2015-09-15       Impact factor: 5.157

Review 8.  The role of ubiquitin-dependent segregase p97 (VCP or Cdc48) in chromatin dynamics after DNA double strand breaks.

Authors:  Ignacio Torrecilla; Judith Oehler; Kristijan Ramadan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-10-05       Impact factor: 6.237

Review 9.  Epigenetic Regulation of Transcription in Trypanosomatid Protozoa.

Authors:  Santiago Martínez-Calvillo; Gabriela Romero-Meza; Juan C Vizuet-de-Rueda; Luis E Florencio-Martínez; Rebeca Manning-Cela; Tomás Nepomuceno-Mejía
Journal:  Curr Genomics       Date:  2018-02       Impact factor: 2.236

10.  ISWI chromatin remodeling complexes in the DNA damage response.

Authors:  Özge Z Aydin; Wim Vermeulen; Hannes Lans
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

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