Literature DB >> 24398527

CTCF and cohesin cooperate to organize the 3D structure of the mammalian genome.

Laura Baranello1, Fedor Kouzine, David Levens.   

Abstract

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Year:  2014        PMID： 24398527      PMCID： PMC3903212          DOI： 10.1073/pnas.1321957111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  18 in total

Review 1.  CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease.

Authors:  R Ohlsson; R Renkawitz; V Lobanenkov
Journal:  Trends Genet       Date:  2001-09       Impact factor: 11.639

Review 2.  Chromosome territories.

Authors:  Thomas Cremer; Marion Cremer
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03       Impact factor: 10.005

3.  Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation.

Authors:  Christian P Bacher; Michèle Guggiari; Benedikt Brors; Sandrine Augui; Philippe Clerc; Philip Avner; Roland Eils; Edith Heard
Journal:  Nat Cell Biol       Date:  2006-01-24       Impact factor: 28.824

4.  Virus Infection Induces NF-kappaB-dependent interchromosomal associations mediating monoallelic IFN-beta gene expression.

Authors:  Effie Apostolou; Dimitris Thanos
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

Review 5.  CTCF: master weaver of the genome.

Authors:  Jennifer E Phillips; Victor G Corces
Journal:  Cell       Date:  2009-06-26       Impact factor: 41.582

6.  Supercoiling of the DNA template during transcription.

Authors:  L F Liu; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

7.  Sticky DNA: in vivo formation in E. coli and in vitro association of long GAA*TTC tracts to generate two independent supercoiled domains.

Authors:  Leslie S Son; Albino Bacolla; Robert D Wells
Journal:  J Mol Biol       Date:  2006-05-24       Impact factor: 5.469

8.  Cohesin mediates transcriptional insulation by CCCTC-binding factor.

Authors:  Kerstin S Wendt; Keisuke Yoshida; Takehiko Itoh; Masashige Bando; Birgit Koch; Erika Schirghuber; Shuichi Tsutsumi; Genta Nagae; Ko Ishihara; Tsuyoshi Mishiro; Kazuhide Yahata; Fumio Imamoto; Hiroyuki Aburatani; Mitsuyoshi Nakao; Naoko Imamoto; Kazuhiro Maeshima; Katsuhiko Shirahige; Jan-Michael Peters
Journal:  Nature       Date:  2008-01-30       Impact factor: 49.962

9.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

10.  Mediator and cohesin connect gene expression and chromatin architecture.

Authors:  Michael H Kagey; Jamie J Newman; Steve Bilodeau; Ye Zhan; David A Orlando; Nynke L van Berkum; Christopher C Ebmeier; Jesse Goossens; Peter B Rahl; Stuart S Levine; Dylan J Taatjes; Job Dekker; Richard A Young
Journal:  Nature       Date:  2010-08-18       Impact factor: 49.962
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  8 in total

Review 1.  Molecular biology of bladder cancer: new insights into pathogenesis and clinical diversity.

Authors:  Margaret A Knowles; Carolyn D Hurst
Journal:  Nat Rev Cancer       Date:  2015-01       Impact factor: 60.716

Review 2.  Chromatin organization in pluripotent cells: emerging approaches to study and disrupt function.

Authors:  Clara Lopes Novo; Peter J Rugg-Gunn
Journal:  Brief Funct Genomics       Date:  2015-07-23       Impact factor: 4.241

3.  The cohesin subunit Rad21 is a negative regulator of hematopoietic self-renewal through epigenetic repression of Hoxa7 and Hoxa9.

Authors:  J B Fisher; J Peterson; M Reimer; C Stelloh; K Pulakanti; Z J Gerbec; A M Abel; J M Strouse; C Strouse; M McNulty; S Malarkannan; J D Crispino; S Milanovich; S Rao
Journal:  Leukemia       Date:  2016-08-24       Impact factor: 11.528

4.  The scaffold protein Nde1 safeguards the brain genome during S phase of early neural progenitor differentiation.

Authors:  Shauna L Houlihan; Yuanyi Feng
Journal:  Elife       Date:  2014-09-23       Impact factor: 8.140

Review 5.  Enhancer functions in three dimensions: beyond the flat world perspective.

Authors:  Anita Göndör; Rolf Ohlsson
Journal:  F1000Res       Date:  2018-05-30

6.  Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes.

Authors:  Adam G Diehl; Ningxin Ouyang; Alan P Boyle
Journal:  Nat Commun       Date:  2020-04-14       Impact factor: 14.919

Review 7.  A cohesive look at leukemogenesis: The cohesin complex and other driving mutations in AML.

Authors:  Katelyn E Heimbruch; Alison E Meyer; Puja Agrawal; Aaron D Viny; Sridhar Rao
Journal:  Neoplasia       Date:  2021-02-20       Impact factor: 5.715

8.  Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes.

Authors:  Jill M Dowen; Zi Peng Fan; Denes Hnisz; Gang Ren; Brian J Abraham; Lyndon N Zhang; Abraham S Weintraub; Jurian Schujiers; Tong Ihn Lee; Keji Zhao; Richard A Young
Journal:  Cell       Date:  2014-10-09       Impact factor: 41.582
  8 in total

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