Literature DB >> 24374217

Epigenetic regulation of the DLK1-MEG3 microRNA cluster in human type 2 diabetic islets.

Vasumathi Kameswaran1, Nuria C Bramswig1, Lindsay B McKenna1, Melinda Penn1, Jonathan Schug1, Nicholas J Hand2, Ying Chen3, Inchan Choi1, Anastassios Vourekas4, Kyoung-Jae Won1, Chengyang Liu5, Kumar Vivek5, Ali Naji6, Joshua R Friedman2, Klaus H Kaestner7.   

Abstract

Type 2 diabetes mellitus (T2DM) is a complex disease characterized by the inability of the insulin-producing β cells in the endocrine pancreas to overcome insulin resistance in peripheral tissues. To determine if microRNAs are involved in the pathogenesis of human T2DM, we sequenced the small RNAs of human islets from diabetic and nondiabetic organ donors. We identified a cluster of microRNAs in an imprinted locus on human chromosome 14q32 that is highly and specifically expressed in human β cells and dramatically downregulated in islets from T2DM organ donors. The downregulation of this locus strongly correlates with hypermethylation of its promoter. Using HITS-CLIP for the essential RISC-component Argonaute, we identified disease-relevant targets of the chromosome 14q32 microRNAs, such as IAPP and TP53INP1, that cause increased β cell apoptosis upon overexpression in human islets. Our results support a role for microRNAs and their epigenetic control by DNA methylation in the pathogenesis of T2DM.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24374217      PMCID: PMC3932527          DOI: 10.1016/j.cmet.2013.11.016

Source DB:  PubMed          Journal:  Cell Metab        ISSN: 1550-4131            Impact factor:   27.287


  51 in total

1.  Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region.

Authors:  Jérôme Cavaillé; Hervé Seitz; Martina Paulsen; Anne C Ferguson-Smith; Jean-Pierre Bachellerie
Journal:  Hum Mol Genet       Date:  2002-06-15       Impact factor: 6.150

2.  A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain.

Authors:  Hervé Seitz; Hélène Royo; Marie-Line Bortolin; Shau-Ping Lin; Anne C Ferguson-Smith; Jérôme Cavaillé
Journal:  Genome Res       Date:  2004-08-12       Impact factor: 9.043

Review 3.  Role of islet amyloid in type 2 diabetes mellitus.

Authors:  Jo W M Höppener; Cees J M Lips
Journal:  Int J Biochem Cell Biol       Date:  2006-01-17       Impact factor: 5.085

4.  p53DINP1, a p53-inducible gene, regulates p53-dependent apoptosis.

Authors:  S Okamura; H Arakawa; T Tanaka; H Nakanishi; C C Ng; Y Taya; M Monden; Y Nakamura
Journal:  Mol Cell       Date:  2001-07       Impact factor: 17.970

5.  Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8.

Authors:  C Charlier; K Segers; D Wagenaar; L Karim; S Berghmans; O Jaillon; T Shay; J Weissenbach; N Cockett; G Gyapay; M Georges
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

6.  Epigenetic detection of human chromosome 14 uniparental disomy.

Authors:  S K Murphy; A A Wylie; K J Coveler; P D Cotter; P R Papenhausen; V R Sutton; L G Shaffer; R L Jirtle
Journal:  Hum Mutat       Date:  2003-07       Impact factor: 4.878

7.  Beta-cell deficit and increased beta-cell apoptosis in humans with type 2 diabetes.

Authors:  Alexandra E Butler; Juliette Janson; Susan Bonner-Weir; Robert Ritzel; Robert A Rizza; Peter C Butler
Journal:  Diabetes       Date:  2003-01       Impact factor: 9.461

8.  A mammalian microRNA expression atlas based on small RNA library sequencing.

Authors:  Pablo Landgraf; Mirabela Rusu; Robert Sheridan; Alain Sewer; Nicola Iovino; Alexei Aravin; Sébastien Pfeffer; Amanda Rice; Alice O Kamphorst; Markus Landthaler; Carolina Lin; Nicholas D Socci; Leandro Hermida; Valerio Fulci; Sabina Chiaretti; Robin Foà; Julia Schliwka; Uta Fuchs; Astrid Novosel; Roman-Ulrich Müller; Bernhard Schermer; Ute Bissels; Jason Inman; Quang Phan; Minchen Chien; David B Weir; Ruchi Choksi; Gabriella De Vita; Daniela Frezzetti; Hans-Ingo Trompeter; Veit Hornung; Grace Teng; Gunther Hartmann; Miklos Palkovits; Roberto Di Lauro; Peter Wernet; Giuseppe Macino; Charles E Rogler; James W Nagle; Jingyue Ju; F Nina Papavasiliou; Thomas Benzing; Peter Lichter; Wayne Tam; Michael J Brownstein; Andreas Bosio; Arndt Borkhardt; James J Russo; Chris Sander; Mihaela Zavolan; Thomas Tuschl
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

Review 9.  Islet amyloid: a critical entity in the pathogenesis of type 2 diabetes.

Authors:  Rebecca L Hull; Gunilla T Westermark; Per Westermark; Steven E Kahn
Journal:  J Clin Endocrinol Metab       Date:  2004-08       Impact factor: 5.958

10.  Human MicroRNA targets.

Authors:  Bino John; Anton J Enright; Alexei Aravin; Thomas Tuschl; Chris Sander; Debora S Marks
Journal:  PLoS Biol       Date:  2004-10-05       Impact factor: 8.029

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  137 in total

Review 1.  Transcriptional Regulation of the Pancreatic Islet: Implications for Islet Function.

Authors:  Michael L Stitzel; Ina Kycia; Romy Kursawe; Duygu Ucar
Journal:  Curr Diab Rep       Date:  2015-09       Impact factor: 4.810

2.  Human islet preparations distributed for research exhibit a variety of insulin-secretory profiles.

Authors:  Nora S Kayton; Gregory Poffenberger; Joseph Henske; Chunhua Dai; Courtney Thompson; Radhika Aramandla; Alena Shostak; Wendell Nicholson; Marcela Brissova; William S Bush; Alvin C Powers
Journal:  Am J Physiol Endocrinol Metab       Date:  2015-02-03       Impact factor: 4.310

3.  DNA methylation of imprinted genes in Mexican-American newborn children with prenatal phthalate exposure.

Authors:  Gwen Tindula; Susan K Murphy; Carole Grenier; Zhiqing Huang; Karen Huen; Maria Escudero-Fung; Asa Bradman; Brenda Eskenazi; Cathrine Hoyo; Nina Holland
Journal:  Epigenomics       Date:  2018-06-29       Impact factor: 4.778

4.  Long non-coding RNAs and hepatocellular carcinoma.

Authors:  Fu-Jun Yu; Jian-Jian Zheng; Pei-Hong Dong; Xiao-Ming Fan
Journal:  Mol Clin Oncol       Date:  2014-09-25

5.  Long non-coding RNA MEG3 inhibits adipogenesis and promotes osteogenesis of human adipose-derived mesenchymal stem cells via miR-140-5p.

Authors:  Zheng Li; Chanyuan Jin; Si Chen; Yunfei Zheng; Yiping Huang; Lingfei Jia; Wenshu Ge; Yongsheng Zhou
Journal:  Mol Cell Biochem       Date:  2017-04-05       Impact factor: 3.396

6.  Epigenetic regulation of the lncRNA MEG3 and its target c-MET in pancreatic neuroendocrine tumors.

Authors:  Sita D Modali; Vaishali I Parekh; Electron Kebebew; Sunita K Agarwal
Journal:  Mol Endocrinol       Date:  2015-01-07

7.  Endothelial and circulating C19MC microRNAs are biomarkers of infantile hemangioma.

Authors:  Graham M Strub; Andrew L Kirsh; Mark E Whipple; Winston P Kuo; Rachel B Keller; Raj P Kapur; Mark W Majesky; Jonathan A Perkins
Journal:  JCI Insight       Date:  2016-09-08

Review 8.  Epigenetics Variation and Pathogenesis in Diabetes.

Authors:  Haichen Zhang; Toni I Pollin
Journal:  Curr Diab Rep       Date:  2018-10-02       Impact factor: 4.810

Review 9.  The miRNA Interactome in Metabolic Homeostasis.

Authors:  Sean M Hartig; Mark P Hamilton; David A Bader; Sean E McGuire
Journal:  Trends Endocrinol Metab       Date:  2015-10-20       Impact factor: 12.015

Review 10.  DLK1-DIO3 imprinted cluster in induced pluripotency: landscape in the mist.

Authors:  Leonidas Benetatos; George Vartholomatos; Eleftheria Hatzimichael
Journal:  Cell Mol Life Sci       Date:  2014-08-07       Impact factor: 9.261

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