Literature DB >> 24362266

Digital pathology and image analysis augment biospecimen annotation and biobank quality assurance harmonization.

Bih-Rong Wei1, R Mark Simpson2.   

Abstract

Standardization of biorepository best practices will enhance the quality of translational biomedical research utilizing patient-derived biobank specimens. Harmonization of pathology quality assurance procedures for biobank accessions has lagged behind other avenues of biospecimen research and biobank development. Comprehension of the cellular content of biorepository specimens is important for discovery of tissue-specific clinically relevant biomarkers for diagnosis and treatment. While rapidly emerging technologies in molecular analyses and data mining create focus on appropriate measures for minimizing pre-analytic artifact-inducing variables, less attention gets paid to annotating the constituent makeup of biospecimens for more effective specimen selection by biobank clients. Both pre-analytic tissue processing and specimen composition influence acquisition of relevant macromolecules for downstream assays. Pathologist review of biorepository submissions, particularly tissues as part of quality assurance procedures, helps to ensure that the intended target cells are present and in sufficient quantity in accessioned specimens. This manual procedure can be tedious and subjective. Incorporating digital pathology into biobank quality assurance procedures, using automated pattern recognition morphometric image analysis to quantify tissue feature areas in digital whole slide images of tissue sections, can minimize variability and subjectivity associated with routine pathologic evaluations in biorepositories. Whole-slide images and pathologist-reviewed morphometric analyses can be provided to researchers to guide specimen selection. Harmonization of pathology quality assurance methods that minimize subjectivity and improve reproducibility among collections would facilitate research-relevant specimen selection by investigators and could facilitate information sharing in an integrated network approach to biobanking. Published by Elsevier Inc.

Entities:  

Keywords:  Biological specimen bank; Biomarkers; Computer-assisted diagnosis; Isolation and purification; Morphometry; Pattern recognition image analysis; Quantitative pathology; Standards

Mesh:

Year:  2013        PMID: 24362266      PMCID: PMC4975042          DOI: 10.1016/j.clinbiochem.2013.12.008

Source DB:  PubMed          Journal:  Clin Biochem        ISSN: 0009-9120            Impact factor:   3.281


  45 in total

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Review 3.  Review paper: Human tissues for discovery biomarker pharmaceutical research: the experience of the Indiana University Simon Cancer Center-Lilly Research Labs Tissue/Fluid BioBank.

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5.  RFID as a new ICT tool to monitor specimen life cycle and quality control in a biobank.

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Authors:  Gail E Henderson; R Jean Cadigan; Teresa P Edwards; Ian Conlon; Anders G Nelson; James P Evans; Arlene M Davis; Catherine Zimmer; Bryan J Weiner
Journal:  Genome Med       Date:  2013-01-25       Impact factor: 11.117

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  9 in total

Review 1.  [Maintainance of a research tissue bank. (Infra)structural and quality aspects].

Authors:  S Schmitt; K Kynast; P Schirmacher; E Herpel
Journal:  Pathologe       Date:  2015-11       Impact factor: 1.011

2.  Diagnostic Accuracy of Virtual Pathology vs Traditional Microscopy in a Large Dermatopathology Study.

Authors:  Michael N Kent; Thomas G Olsen; Theresa A Feeser; Katherine C Tesno; John C Moad; Michael P Conroy; Mary Jo Kendrick; Sean R Stephenson; Michael R Murchland; Ayesha U Khan; Elizabeth A Peacock; Alexa Brumfiel; Michael A Bottomley
Journal:  JAMA Dermatol       Date:  2017-12-01       Impact factor: 10.282

3.  Spatial Statistics for Segmenting Histological Structures in H&E Stained Tissue Images.

Authors:  Luong Nguyen; Akif Burak Tosun; Jeffrey L Fine; Adrian V Lee; D Lansing Taylor; S Chakra Chennubhotla
Journal:  IEEE Trans Med Imaging       Date:  2017-03-16       Impact factor: 10.048

Review 4.  Advancing clinical and translational research in germ cell tumours (GCT): recommendations from the Malignant Germ Cell International Consortium.

Authors:  Adriana Fonseca; João Lobo; Florette K Hazard; Joanna Gell; Peter K Nicholls; Robert S Weiss; Lindsay Klosterkemper; Samuel L Volchenboum; James C Nicholson; A Lindsay Frazier; James F Amatruda; Aditya Bagrodia; Michelle Lockley; Matthew J Murray
Journal:  Br J Cancer       Date:  2022-10-13       Impact factor: 9.075

5.  EPMA position paper in cancer: current overview and future perspectives.

Authors:  Godfrey Grech; Xianquan Zhan; Byong Chul Yoo; Rostyslav Bubnov; Suzanne Hagan; Romano Danesi; Giorgio Vittadini; Dominic M Desiderio
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6.  Emerging Tools for Computer-Aided Diagnosis and Prognostication.

Authors:  Scott Ritter; Kenneth B Margulies
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7.  Establishing a Dedicated Lung Cancer Biobank at the University Center Hospital of Nice (France). Why and How?

Authors:  Kevin Washetine; Simon Heeke; Christelle Bonnetaud; Mehdi Kara-Borni; Marius Ilié; Sandra Lassalle; Catherine Butori; Elodie Long-Mira; Charles Hugo Marquette; Charlotte Cohen; Jérôme Mouroux; Eric Selva; Virginie Tanga; Coraline Bence; Jean-Marc Félix; Loic Gazoppi; Taycir Skhiri; Emmanuelle Gormally; Pascal Boucher; Bruno Clément; Georges Dagher; Véronique Hofman; Paul Hofman
Journal:  Cancers (Basel)       Date:  2018-06-29       Impact factor: 6.639

8.  Diagnostic Performance of Deep Learning Algorithms Applied to Three Common Diagnoses in Dermatopathology.

Authors:  Thomas George Olsen; B Hunter Jackson; Theresa Ann Feeser; Michael N Kent; John C Moad; Smita Krishnamurthy; Denise D Lunsford; Rajath E Soans
Journal:  J Pathol Inform       Date:  2018-09-27

9.  NDER: A novel web application using annotated whole slide images for rapid improvements in human pattern recognition.

Authors:  Nicholas P Reder; Daniel Glasser; Suzanne M Dintzis; Mara H Rendi; Rochelle L Garcia; Jonathan C Henriksen; Mark R Kilgore
Journal:  J Pathol Inform       Date:  2016-07-26
  9 in total

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