Literature DB >> 20949397

Biobanking of fresh frozen tissue from clinical surgical specimens: transport logistics, sample selection, and histologic characterization.

Johan Botling1, Patrick Micke.   

Abstract

Access to high-quality fresh frozen tissue is critical for translational cancer research and molecular -diagnostics. Here we describe a workflow for the collection of frozen solid tissue samples derived from fresh human patient specimens after surgery. The routines have been in operation at Uppsala University Hospital since 2001. We have integrated cryosection and histopathologic examination of each biobank sample into the biobank manual. In this way, even small, macroscopically ill-defined lesions can be -procured without a diagnostic hazard due to the removal of uncharacterized tissue from a clinical -specimen. Also, knowledge of the histomorphology of the frozen tissue sample - tumor cell content, stromal components, and presence of necrosis - is pivotal before entering a biobank case into costly molecular profiling studies.

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Year:  2011        PMID: 20949397     DOI: 10.1007/978-1-59745-423-0_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

Review 1.  Quality assurance of RNA expression profiling in clinical laboratories.

Authors:  Weihua Tang; Zhiyuan Hu; Hind Muallem; Margaret L Gulley
Journal:  J Mol Diagn       Date:  2011-10-20       Impact factor: 5.568

2.  Quantifying histological features of cancer biospecimens for biobanking quality assurance using automated morphometric pattern recognition image analysis algorithms.

Authors:  Joshua D Webster; Eleanor R Simpson; Aleksandra M Michalowski; Shelley B Hoover; R Mark Simpson
Journal:  J Biomol Tech       Date:  2011-09

Review 3.  Biopsies: next-generation biospecimens for tailoring therapy.

Authors:  Mark Basik; Adriana Aguilar-Mahecha; Caroline Rousseau; Zuanel Diaz; Sabine Tejpar; Alan Spatz; Celia M T Greenwood; Gerald Batist
Journal:  Nat Rev Clin Oncol       Date:  2013-06-25       Impact factor: 66.675

Review 4.  Advancing clinical and translational research in germ cell tumours (GCT): recommendations from the Malignant Germ Cell International Consortium.

Authors:  Adriana Fonseca; João Lobo; Florette K Hazard; Joanna Gell; Peter K Nicholls; Robert S Weiss; Lindsay Klosterkemper; Samuel L Volchenboum; James C Nicholson; A Lindsay Frazier; James F Amatruda; Aditya Bagrodia; Michelle Lockley; Matthew J Murray
Journal:  Br J Cancer       Date:  2022-10-13       Impact factor: 9.075

5.  Digital pathology and image analysis augment biospecimen annotation and biobank quality assurance harmonization.

Authors:  Bih-Rong Wei; R Mark Simpson
Journal:  Clin Biochem       Date:  2013-12-18       Impact factor: 3.281

6.  Clinical implementation of RNA signatures for pharmacogenomic decision-making.

Authors:  Weihua Tang; Zhiyuan Hu; Hind Muallem; Margaret L Gulley
Journal:  Pharmgenomics Pers Med       Date:  2011-09-08
  6 in total

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