Literature DB >> 24352855

Selective stabilization of ribose by borate.

Yoshihiro Furukawa1, Mana Horiuchi, Takeshi Kakegawa.   

Abstract

In this study, borate was found to selectively increase the stability of ribose over other aldopentoses. Ribose is the only sugar present in both early RNA-based biochemistry and contemporary DNA-based life, and the stability of ribose is of fundamental concern for determining the origin of early RNA-based biochemistry. The formose reaction is a potential process in the prebiotic synthesis of ribose and its stereoisomers arabinose, xylose, and lyxose. Ribose is the least stable of these aldopentoses, raising the fundamental question of whether it was originally a component of primitive RNA or was selected through biotic processes. Borate is known to increase the stability of aldopentoses, but the specific differences in the stabilization achieved among different stereoisomers remain unclear. In this study, it was found that the stabilities of all of the tested pentoses increased with the concentration of added borate, but notably, the stability of ribose increased the most. The predominant formation of complexes between borate and ribose was verified, in agreement with previous studies. This borate complex formation might have sequestered ribose from the isomerization and decomposition reactions, resulting in its selective stabilization. These findings indicate that ribose could have accumulated in borate-rich environments on the early Earth and suggest that ribose-based nucleotides combined with phosphate and nucleobases formed abiotically.

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Year:  2013        PMID: 24352855     DOI: 10.1007/s11084-013-9350-5

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  17 in total

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Journal:  Science       Date:  1990-07-27       Impact factor: 47.728

6.  Theoretical study on the factors controlling the stability of the borate complexes of ribose, arabinose, lyxose, and xylose.

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Journal:  Chemistry       Date:  2008       Impact factor: 5.236

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Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

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Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-29       Impact factor: 11.205

9.  Prebiotic ribose synthesis: a critical analysis.

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Journal:  Orig Life Evol Biosph       Date:  1988       Impact factor: 1.950

Review 10.  Prebiotic chemistry and the origin of the RNA world.

Authors:  Leslie E Orgel
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Mar-Apr       Impact factor: 8.250

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  11 in total

1.  Origin of the RNA world: The fate of nucleobases in warm little ponds.

Authors:  Ben K D Pearce; Ralph E Pudritz; Dmitry A Semenov; Thomas K Henning
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-02       Impact factor: 11.205

2.  Borate-guided ribose phosphorylation for prebiotic nucleotide synthesis.

Authors:  Yuta Hirakawa; Takeshi Kakegawa; Yoshihiro Furukawa
Journal:  Sci Rep       Date:  2022-07-19       Impact factor: 4.996

3.  Occurrence of Tourmaline in Metasedimentary Rocks of the Isua Supracrustal Belt, Greenland: Implications for Ribose Stabilization in Hadean Marine Sediments.

Authors:  Shinpei Mishima; Yoko Ohtomo; Takeshi Kakegawa
Journal:  Orig Life Evol Biosph       Date:  2015-12-02       Impact factor: 1.950

4.  Effects of Silicate, Phosphate, and Calcium on the Stability of Aldopentoses.

Authors:  Sakiko Nitta; Yoshihiro Furukawa; Takeshi Kakegawa
Journal:  Orig Life Evol Biosph       Date:  2015-11-11       Impact factor: 1.950

Review 5.  Prebiotic Pathway from Ribose to RNA Formation.

Authors:  Gaspar Banfalvi
Journal:  Int J Mol Sci       Date:  2021-04-08       Impact factor: 6.208

6.  Hydroxymethanesulfonate from Volcanic Sulfur Dioxide: A "Mineral" Reservoir for Formaldehyde and Other Simple Carbohydrates in Prebiotic Chemistry.

Authors:  J Kawai; D Chris McLendon; H-J Kim; S A Benner
Journal:  Astrobiology       Date:  2019-01-07       Impact factor: 4.335

7.  Novel enzymatic single-nucleotide modification of DNA oligomer: prevention of incessant incorporation of nucleotidyl transferase by ribonucleotide-borate complex.

Authors:  Eui Kyoung Jang; Ryeo Gang Son; Seung Pil Pack
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

Review 8.  Proto-Urea-RNA (Wöhler RNA) Containing Unusually Stable Urea Nucleosides.

Authors:  Hidenori Okamura; Antony Crisp; Sarah Hübner; Sidney Becker; Petra Rovó; Thomas Carell
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-30       Impact factor: 15.336

Review 9.  Nothing Boring About Boron.

Authors:  Lara Pizzorno
Journal:  Integr Med (Encinitas)       Date:  2015-08

Review 10.  A Self-Assembled Aggregate Composed of a Fatty Acid Membrane and the Building Blocks of Biological Polymers Provides a First Step in the Emergence of Protocells.

Authors:  Roy A Black; Matthew C Blosser
Journal:  Life (Basel)       Date:  2016-08-11
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