Literature DB >> 28973920

Origin of the RNA world: The fate of nucleobases in warm little ponds.

Ben K D Pearce1,2, Ralph E Pudritz3,2,4,5, Dmitry A Semenov4, Thomas K Henning4.   

Abstract

Before the origin of simple cellular life, the building blocks of RNA (nucleotides) had to form and polymerize in favorable environments on early Earth. At this time, meteorites and interplanetary dust particles delivered organics such as nucleobases (the characteristic molecules of nucleotides) to warm little ponds whose wet-dry cycles promoted rapid polymerization. We build a comprehensive numerical model for the evolution of nucleobases in warm little ponds leading to the emergence of the first nucleotides and RNA. We couple Earth's early evolution with complex prebiotic chemistry in these environments. We find that RNA polymers must have emerged very quickly after the deposition of meteorites (less than a few years). Their constituent nucleobases were primarily meteoritic in origin and not from interplanetary dust particles. Ponds appeared as continents rose out of the early global ocean, but this increasing availability of "targets" for meteorites was offset by declining meteorite bombardment rates. Moreover, the rapid losses of nucleobases to pond seepage during wet periods, and to UV photodissociation during dry periods, mean that the synthesis of nucleotides and their polymerization into RNA occurred in just one to a few wet-dry cycles. Under these conditions, RNA polymers likely appeared before 4.17 billion years ago.

Entities:  

Keywords:  RNA world; astrobiology; life origins; meteoritics; planetary science

Mesh:

Substances:

Year:  2017        PMID: 28973920      PMCID: PMC5664528          DOI: 10.1073/pnas.1710339114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  SYNTHESIS OF ADENOSINE TRIPHOSPHATE UNDER POSSIBLE PRIMITIVE EARTH CONDITIONS.

Authors:  C PONNAMPERUMA; C SAGAN; R MARINER
Journal:  Nature       Date:  1963-07-20       Impact factor: 49.962

2.  Extreme accumulation of nucleotides in simulated hydrothermal pore systems.

Authors:  Philipp Baaske; Franz M Weinert; Stefan Duhr; Kono H Lemke; Michael J Russell; Dieter Braun
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

3.  The effect of Mg2+ and Ca2+ on urea-catalyzed phosphorylation reactions.

Authors:  G J Handschuh; R Lohrmann; L E Orgel
Journal:  J Mol Evol       Date:  1973-11-27       Impact factor: 2.395

4.  Non-enzymatic hydrolysis of adenosine phosphates.

Authors:  H R Hulett
Journal:  Nature       Date:  1970-03-28       Impact factor: 49.962

5.  Synthesis of long prebiotic oligomers on mineral surfaces.

Authors:  J P Ferris; A R Hill; R Liu; L E Orgel
Journal:  Nature       Date:  1996-05-02       Impact factor: 49.962

6.  The oxidation state of Hadean magmas and implications for early Earth's atmosphere.

Authors:  Dustin Trail; E Bruce Watson; Nicholas D Tailby
Journal:  Nature       Date:  2011-11-30       Impact factor: 49.962

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Authors:  P Ehrenfreund; D P Glavin; O Botta; G Cooper; J L Bada
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

Review 8.  Endogenous production, exogenous delivery and impact-shock synthesis of organic molecules: an inventory for the origins of life.

Authors:  C Chyba; C Sagan
Journal:  Nature       Date:  1992-01-09       Impact factor: 49.962

9.  Diurnal temperature fluctuations in an artificial small shallow water body.

Authors:  Adrie F G Jacobs; Bert G Heusinkveld; Aline Kraai; Krijn P Paaijmans
Journal:  Int J Biometeorol       Date:  2007-10-10       Impact factor: 3.787

Review 10.  Prebiotic chemistry and the origin of the RNA world.

Authors:  Leslie E Orgel
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Mar-Apr       Impact factor: 8.250

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  33 in total

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2.  Mineral surfaces select for longer RNA molecules.

Authors:  Ryo Mizuuchi; Alex Blokhuis; Lena Vincent; Philippe Nghe; Niles Lehman; David Baum
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Review 3.  An RNA toolbox for cancer immunotherapy.

Authors:  Fernando Pastor; Pedro Berraondo; Iñaki Etxeberria; Josh Frederick; Ugur Sahin; Eli Gilboa; Ignacio Melero
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4.  The Origin(s) of Cell(s): Pre-Darwinian Evolution from FUCAs to LUCA : To Carl Woese (1928-2012), for his Conceptual Breakthrough of Cellular Evolution.

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Journal:  J Mol Evol       Date:  2021-06-25       Impact factor: 2.395

5.  Darwin's prescient guess.

Authors:  David Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-13       Impact factor: 11.205

6.  Intrinsic concentration cycles and high ion fluxes in self-assembled precipitate membranes.

Authors:  Yang Ding; Julyan H E Cartwright; Silvana S S Cardoso
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

7.  Probing complexity: thermodynamics and computational mechanics approaches to origins studies.

Authors:  Stuart J Bartlett; Patrick Beckett
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

8.  Searching for Life, Mindful of Lyfe's Possibilities.

Authors:  Michael L Wong; Stuart Bartlett; Sihe Chen; Louisa Tierney
Journal:  Life (Basel)       Date:  2022-05-25

9.  Non-associative phase separation in an evaporating droplet as a model for prebiotic compartmentalization.

Authors:  Wei Guo; Andrew B Kinghorn; Yage Zhang; Qingchuan Li; Aditi Dey Poonam; Julian A Tanner; Ho Cheung Shum
Journal:  Nat Commun       Date:  2021-05-27       Impact factor: 14.919

Review 10.  The "Water Problem"(sic), the Illusory Pond and Life's Submarine Emergence-A Review.

Authors:  Michael J Russell
Journal:  Life (Basel)       Date:  2021-05-10
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