| Literature DB >> 24349246 |
Salvador Pastor-Idoate1, Irene Rodríguez-Hernández2, Jimena Rojas3, Itziar Fernández3, María T García-Gutiérrez3, José M Ruiz-Moreno4, Amandio Rocha-Sousa5, Yashin Ramkissoon6, Steven Harsum6, Robert E MacLaren7, David Charteris6, Jan C VanMeurs8, Rogelio González-Sarmiento2, José C Pastor3.
Abstract
Proliferative vitreoretinopathy (PVR) is still the major cause of failure in retinal detachment (RD) surgery. It is believed that down-regulation in the p53 pathway could be an important key in PVR pathogenesis. The purpose was to evaluate the impact of T309G MDM2 polymorphism (rs2279744) in PVR. Distribution of T309G MDM2 genotypes among European subjects undergoing RD surgery was evaluated. Proportions of genotypes between subsamples from different countries were analyzed. Also, a genetic interaction between rs2279744 in MDM2 and rs1042522 in p53 gene was analyzed. Significant differences were observed comparing MDM2 genotype frequencies at position 309 of intron 1 between cases (GG: 21.6%, TG: 54.5%, TT: 23.8%) and controls (GG: 7.3%, TG: 43.9%, TT: 48.7%). The proportions of genotypes between sub-samples from different countries showed a significant difference. Distribution of GG genotype revealed differences in Spain (35.1-53.0)/(22.6-32.9), Portugal (39.0-74.4)/(21.4-38.9), Netherlands (40.6-66.3)/(25.3-38.8) and UK (37.5-62.4)/(23.3-34.2). The OR of G carriers in the global sample was 5.9 (95% CI: 3.2 to 11.2). The OR of G carriers from Spain and Portugal was 5.4 (95% CI: 2.2-12.7), whereas in the UK and the Netherlands was 7.3 (95% CI: 2.8-19.1). Results indicate that the G allele of rs2279744 is associated with a higher risk of developing PVR in patients undergoing a RD surgery. Further studies are necessary to understand the role of this SNP in the development of PVR.Entities:
Mesh:
Substances:
Year: 2013 PMID: 24349246 PMCID: PMC3857251 DOI: 10.1371/journal.pone.0082283
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1PCR-RFLP to determine MDM2 SNP309 polymorphism.
MDM2 SNP309 T allele is not cleaved by MspA1I endonuclease and generates a single fragment of 155 bp. The MDM2 SNP309 G allele is cleaved by MspA1I and generates two small fragments of 101 and 54 bp. The MDM2 SNP309 heterozygote displays three fragments of 155, 101 and 54 bp.
Clinical characteristics of the whole sample.
| Characteristics | Controls, n RD (%) | Cases, n PVR (%) | Total | P-value |
|
| 0,064 | |||
| -Caucasian | 370 (73.56%) | 133 (26.44%) | 503 | |
| -Hispano-American | 6 (46.15%) | 7 (53.85%) | 13 | |
| -Hindu | 7 (58.33%) | 5 (41.67%) | 12 | |
| -Arabic-North-African | 6 (100%) | 0 | 6 | |
| -Sub-Saharan | 2 (50%) | 2 (50%) | 4 | |
| -Asian | 3 (60%) | 2 (40%) | 5 | |
| -Unknown | 12 | |||
|
| 0,362 | |||
| -Male | 248 (71.26%) | 100 (25.37%) | 348 | |
| -Female | 135 (75%) | 45 (31.42%) | 180 | |
| -Unknown | 27 | |||
|
| 0,233 | |||
| -Yes | 250 (74.63%) | 85 (25.37%) | 335 | |
| -No | 131 (68.58%) | 59 (31.42%) | 190 | |
| -Unknown | 30 | |||
|
| 0,528 | |||
| -Yes | 32 (76.19%) | 10 (23.81%) | 42 | |
| -No | 355 (68.58%) | 136 (31.42%) | 491 | |
| -Unknown | 22 | |||
|
| 0,005( | |||
| -Yes | 0 | 5 (100%) | 5 | |
| -No | 141 (26.70%) | 387 (73.30%) | 528 | |
| -Unknown | 22 | |||
|
| 0,171 | |||
| -Northern countries (UK+Netherlands) | 224 (78.87%) | 60 (22.2%) | 284 | |
| -Southern countries (Spain+Portugal) | 197 (72.7%) | 74 (27.3%) | 271 |
RD: Retinal detachment; PVR: Proliferative vitreoretinopathy.
* p-value: Chi-squared or Fisheŕs exact test in the statistical analysis of clinical characteristics of the whole sample of the global sample. (*) A significant association in patients with history of PVR in the fellow eye was found in the cases group.
Distribution of genotypes and allelic frequencies in cases with PVR and controls.
| Countries | Genotype | Controls | Cases | P-value Fisheŕs test | Corrected P-value | Alleles | Controls | Cases | Controls (95% CI Alleles) | Cases (95% CI Alleles) | P-value Chi Square test | OR | CI OR 95% |
|
| T/T | 72 (50.0%) | 18 (30.5%) | 0.0037 | 0,0039 | G | 80 (27.8%) | 52 (44.0%) | (22.6–32.9) | (35.1–53.0) | 0.0012 | 2.0 | (1.31–3.19) |
| T/G | 64 (44.4%) | 30 (50.9%) | T | 208 (72.2%) | 66 (56.0%) | (67.0–77.4) | (46.9–64.9) | ||||||
| G/G | 8 (5.6%) | 11 (18.6%) | |||||||||||
|
| T/T | 27 (51.0%) | 3 (20.0%) | 0.0387 | 0,0449 | G | 32 (30.2%) | 17 (56.7%) | (21.4–38.9) | (39.0–74.4) | 0.0156 | 3.0 | (1.31–6.95) |
| T/G | 20 (37.7%) | 7 (46.7%) | T | 74 (69.8%) | 13 (43.3%) | (61.7–78.5) | (61.0–25.6) | ||||||
| G/G | 6 (11.3%) | 5 (33.3%) | |||||||||||
|
| T/T | 66 (50.0%) | 7 (22.6%) | 0.0047 | 0,0059 | G | 76 (28.8%) | 31 (50.0%) | (23.3–34.2) | (37.5–62.5) | 0.0015 | 2.4 | (1.40–4.35) |
| T/G | 56 (42.4%) | 17 (54.8%) | T | 188 (71.2%) | 31 (50.0%) | (65.7–76.6) | (37.5–62.5) | ||||||
| G/G | 10 (7.6%) | 7 (22.6%) | |||||||||||
|
| T/T | 40 (43.5%) | 4 (13.8%) | 0.0037 | 0,0049 | G | 59 (32.0%) | 31 (53.5%) | (25.3–38.8) | (40.6–66.2) | 0.0023 | 2.4 | (1.27–464) |
| T/G | 45 (48.9%) | 19 (65.5%) | T | 125 (68.0%) | 27 (46.5%) | (61.1–74.8) | (46.5–59.3) | ||||||
| G/G | 7 (7.6%) | 6 (20.7%) |
1 Fisheŕs test. Ho. Independence between genotype case/control group. Significant differences were observed between cases and controls in the G/G genotype in Spain and Portugal, and in UK and Netherlands.
2 Permutation test for multiple comparison adjustment.
3 G homozygote carrier analysis between different countries revealed differences in Spain and Portugal as well as in Netherlands and UK.
* OR : odds-ratio.
Models of inheritance in the global sample.
| Model | Genotype | Controls | Cases | OR* | CI 95% | P-value | AIC* | Corrected P-value |
|
| T/T | 205 (48.7%) | 32 (24.0%) | 1.00 | 2.0374e-08 | 584.1 | 0,0009 | |
| T/G | 185 (43.9%) | 73 (54.4%) | 2.53 | (1.59–4.01) | ||||
| G/G | 31 (7.4%) | 29 (21.6%) | 5.99 | (3.20–11.24) | ||||
|
| T/T | 205 (48.7%) | 32 (24.0%) | 1.00 | - | 2.1790e-07 | 590.7 | 0,0009 |
| T/G-G/G | 216 (51.3%) | 102 (76.0%) | 3.03 | (1.95–4.70) | ||||
|
| T/T-T/G | 390 (92.6%) | 105 (78.4%) | 1.00 | - | 1.4218e-05 | 598.7 | 0,0009 |
| G/G | 31 (7.4%) | 29 (21.6%) | 3.47 | (2.00–6,02) | ||||
|
| T/T-G/G | 236 (56.1%) | 61 (45.6%) | 1.00 | - | 3.3371e-02 | 613.0 | 0,0319 |
| T/G | 185 (43.9%) | 73 (54.4%) | 1.53 | (1.03–2.26) | ||||
|
| T/T | 99 (50.3%) | 21 (28.4%) | 1.00 | - | 0.0003 | 307.7 | 0,0019 |
| T/G | 84 (42.6%) | 37 (50.0%) | 2.08 | (1.13–3.82) | ||||
| G/G | 14 (7.1%) | 16 (21.6%) | 5.44 | (2.30–12.7) | ||||
|
| T/T | 106 (47.3%) | 11 (18.3%) | 1.00 | - | 2.6566e-05 | 277.8 | 0,0009 |
| T/G | 101 (45.1%) | 36 (60.0%) | 3.43 | (1.66–7.11) | ||||
| G/G | 17 (7.6%) | 13 (21.7%) | 7.30 | (2.80–19.01) |
OR* (odds ratio).
AIC*(Akaike Information Criterion); The AIC is a measure of the relative goodness of fit of a statistical model. It can generally be used for the identification of an optimum model in a class of competing models.
Given a set of candidate models for the data, the preferred model is the one with the minimum AIC value.
1 Permutation test for multiple comparison adjustment.
Results of odds ratio using a co-dominant model for Spain plus Portugal and Netherlands plus United Kingdom (UK).
Distribution of MDM2 T309G polymorphism in the whole sample.
| Genotypes | T/T | T/G | G/G | Total | CI 95% | P-value Fisheŕs test | Corrected P-value | OR2 | CI OR 95%2 |
|
| 32 (23.9%) | 73 (54.5%) | 29 (21.6%) | 134 (100%) | (42.9–54.8) | 1.6738e-08 | 0.00091 | 2.3 | (1.73–3.05)2 |
|
| 205 (48.7%) | 185 (43.9%) | 31 (7.4%) | 421 (100%) | (26.2–32.4) | - | - | ||
|
| 237 | 258 | 60 | 555 |
1. Permutation test for multiple comparison adjustment.
2. OR. (Odds ratio).
* Analysis of G homozygote carriers between case/control group.
Fisheŕs test.
Genetic interaction between p53 Pro72Arg SNP (rs1042522) and MDM2 T309G SNP (rs2279744) in the global sample and in sub-samples from different countries.
| Genotype | Sample | Controls | Cases | P-value | Corrected P-value | OR* | 95% CI OR |
|
| Global | 4 | 12 | 2.1139e-05 | 0.0009 | 10.19 | (3.2–31.9) |
| Spain+Portugal | 1 | 7 | 0.0005 | 0,0009 | 20.4 | (2.4–169.5) | |
| Netherlands+UK | 3 | 5 | 0.0130 | 0,0169 | 6.5 | (1.5–28.2) |
1 Permutation test for multiple comparison adjustment.
OR*: odds ratio.
Results of patients (2.91%), who meet with both genotypes (Pro variant plus G variant carriers).