Literature DB >> 24320725

Enhanced catalysis of oxime-based bioconjugations by substituted anilines.

Michaela Wendeler1, Luba Grinberg, Xiangyang Wang, Philip E Dawson, Manuel Baca.   

Abstract

The conjugation of biomolecules by chemoselective oxime ligation is of great interest for the site-specific modification of proteins, peptides, nucleic acids, and carbohydrates. These conjugations proceed optimally at a reaction pH of 4-5, but some biomolecules are not soluble or stable under these conditions. Aniline can be used as a nucleophilic catalyst to enhance the rate of oxime formation, but even in its presence, the reaction rate at neutral pH can be slower than desired, particularly at low reagent concentrations and/or temperature. Recently, alternative catalysts with improved properties were reported, including anthranilic acid derivatives for small molecule ligations, as well as m-phenylenediamine at high concentrations for protein conjugations. Here, we report that p-substituted anilines containing an electron-donating ring substituent are superior catalysts of oxime-based conjugations at pH 7. One such catalyst, p-phenylenediamine, was studied in greater detail. This catalyst was highly effective at neutral pH, even at the low concentration of 2 mM. In a model oxime ligation using aminooxy-functionalized PEG, catalysis at pH 7 resulted in a 120-fold faster rate of protein PEGylation as compared to an uncatalyzed reaction, and 19-fold faster than the equivalent aniline-catalyzed reaction. p-Phenylenediamine (10 mM) was also an effective catalyst under acidic conditions and was more efficient than aniline throughout the pH range 4-7. This catalyst allows efficient oxime bioconjugations to proceed under mild conditions and low micromolar concentrations, as demonstrated by the PEGylation of a small protein.

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Year:  2013        PMID: 24320725     DOI: 10.1021/bc400380f

Source DB:  PubMed          Journal:  Bioconjug Chem        ISSN: 1043-1802            Impact factor:   4.774


  33 in total

1.  Application of meta- and para-Phenylenediamine as Enhanced Oxime Ligation Catalysts for Protein Labeling, PEGylation, Immobilization, and Release.

Authors:  Mohammad M Mahmoodi; Mohammad Rashidian; Yi Zhang; Mark D Distefano
Journal:  Curr Protoc Protein Sci       Date:  2015-02-02

2.  A genetically encoded aldehyde for rapid protein labelling.

Authors:  Alfred Tuley; Yan-Jiun Lee; Bo Wu; Zhiyong U Wang; Wenshe R Liu
Journal:  Chem Commun (Camb)       Date:  2014-07-18       Impact factor: 6.222

Review 3.  Oximes and Hydrazones in Bioconjugation: Mechanism and Catalysis.

Authors:  Dominik K Kölmel; Eric T Kool
Journal:  Chem Rev       Date:  2017-06-22       Impact factor: 60.622

Review 4.  Targeting the N terminus for site-selective protein modification.

Authors:  Christian B Rosen; Matthew B Francis
Journal:  Nat Chem Biol       Date:  2017-06-20       Impact factor: 15.040

5.  A Clickable Aminooxy Probe for Monitoring Cellular ADP-Ribosylation.

Authors:  Rory K Morgan; Michael S Cohen
Journal:  ACS Chem Biol       Date:  2015-05-27       Impact factor: 5.100

6.  Genetic Incorporation of the Unnatural Amino Acid p-Acetyl Phenylalanine into Proteins for Site-Directed Spin Labeling.

Authors:  Eric G B Evans; Glenn L Millhauser
Journal:  Methods Enzymol       Date:  2015-07-02       Impact factor: 1.600

Review 7.  Click chemistry in complex mixtures: bioorthogonal bioconjugation.

Authors:  Craig S McKay; M G Finn
Journal:  Chem Biol       Date:  2014-09-18

8.  Dark Hydrazone Fluorescence Labeling Agents Enable Imaging of Cellular Aldehydic Load.

Authors:  Lik Hang Yuen; Nivedita S Saxena; Hyun Shin Park; Kenneth Weinberg; Eric T Kool
Journal:  ACS Chem Biol       Date:  2016-06-24       Impact factor: 5.100

9.  Secondary modification of oxidatively-modified proline N-termini for the construction of complex bioconjugates.

Authors:  Johnathan C Maza; Alexandra V Ramsey; Meire Mehare; Shane W Krska; Craig A Parish; Matthew B Francis
Journal:  Org Biomol Chem       Date:  2020-02-26       Impact factor: 3.876

10.  Human Serum Albumin Domain I Fusion Protein for Antibody Conjugation.

Authors:  James T Patterson; Henry D Wilson; Shigehiro Asano; Napon Nilchan; Roberta P Fuller; William R Roush; Christoph Rader; Carlos F Barbas
Journal:  Bioconjug Chem       Date:  2016-09-26       Impact factor: 4.774

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