Literature DB >> 24304155

Calculations of the electric fields in liquid solutions.

Stephen D Fried1, Lee-Ping Wang, Steven G Boxer, Pengyu Ren, Vijay S Pande.   

Abstract

The electric field created by a condensed-phase environment is a powerful and convenient descriptor for intermolecular interactions. Not only does it provide a unifying language to compare many different types of interactions, but it also possesses clear connections to experimental observables, such as vibrational Stark effects. We calculate here the electric fields experienced by a vibrational chromophore (the carbonyl group of acetophenone) in an array of solvents of diverse polarities using molecular dynamics simulations with the AMOEBA polarizable force field. The mean and variance of the calculated electric fields correlate well with solvent-induced frequency shifts and band broadening, suggesting Stark effects as the underlying mechanism of these key solution-phase spectral effects. Compared to fixed-charge and continuum models, AMOEBA was the only model examined that could describe nonpolar, polar, and hydrogen bonding environments in a consistent fashion. Nevertheless, we found that fixed-charge force fields and continuum models were able to replicate some results of the polarizable simulations accurately, allowing us to clearly identify which properties and situations require explicit polarization and/or atomistic representations to be modeled properly, and to identify for which properties and situations simpler models are sufficient. We also discuss the ramifications of these results for modeling electrostatics in complex environments, such as proteins.

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Year:  2013        PMID: 24304155      PMCID: PMC4211882          DOI: 10.1021/jp410720y

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  45 in total

1.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

Review 2.  The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology.

Authors:  F Fogolari; A Brigo; H Molinari
Journal:  J Mol Recognit       Date:  2002 Nov-Dec       Impact factor: 2.137

3.  Internal stark effect measurement of the electric field at the amino terminus of an alpha helix.

Authors:  D J Lockhart; P S Kim
Journal:  Science       Date:  1992-08-14       Impact factor: 47.728

4.  Distributed Multipole Analysis:  Stability for Large Basis Sets.

Authors:  Anthony J Stone
Journal:  J Chem Theory Comput       Date:  2005-11       Impact factor: 6.006

5.  An interpretation of fluctuations in enzyme catalysis rate, spectral diffusion, and radiative component of lifetimes in terms of electric field fluctuations.

Authors:  Meher K Prakash; R A Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-02       Impact factor: 11.205

6.  Molecular-level mechanisms of vibrational frequency shifts in a polar liquid.

Authors:  Christine M Morales; Ward H Thompson
Journal:  J Phys Chem B       Date:  2011-05-24       Impact factor: 2.991

Review 7.  Stark spectroscopy: applications in chemistry, biology, and materials science.

Authors:  G U Bublitz; S G Boxer
Journal:  Annu Rev Phys Chem       Date:  1997       Impact factor: 12.703

8.  Measuring electrostatic fields in both hydrogen-bonding and non-hydrogen-bonding environments using carbonyl vibrational probes.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2013-07-18       Impact factor: 15.419

9.  Calculation of the Vibrational Stark Effect Using a First-Principles QM/MM Approach.

Authors:  Ashley L Ringer; Alexander D Mackerell
Journal:  J Phys Chem Lett       Date:  2011-02-21       Impact factor: 6.475

10.  Effect of solvent polarity on the vibrational dephasing dynamics of the nitrosyl stretch in an Fe(II) complex revealed by 2D IR spectroscopy.

Authors:  Jennifer F Brookes; Karla M Slenkamp; Michael S Lynch; Munira Khalil
Journal:  J Phys Chem A       Date:  2013-03-25       Impact factor: 2.781

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  22 in total

Review 1.  Site-specific infrared probes of proteins.

Authors:  Jianqiang Ma; Ileana M Pazos; Wenkai Zhang; Robert M Culik; Feng Gai
Journal:  Annu Rev Phys Chem       Date:  2015-01-12       Impact factor: 12.703

2.  Ester carbonyl vibration as a sensitive probe of protein local electric field.

Authors:  Ileana M Pazos; Ayanjeet Ghosh; Matthew J Tucker; Feng Gai
Journal:  Angew Chem Int Ed Engl       Date:  2014-04-30       Impact factor: 15.336

3.  Extreme electric fields power catalysis in the active site of ketosteroid isomerase.

Authors:  Stephen D Fried; Sayan Bagchi; Steven G Boxer
Journal:  Science       Date:  2014-12-19       Impact factor: 47.728

4.  Measuring electric fields and noncovalent interactions using the vibrational stark effect.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Acc Chem Res       Date:  2015-03-23       Impact factor: 22.384

5.  Solvent-Independent Anharmonicity for Carbonyl Oscillators.

Authors:  Samuel H Schneider; Huong T Kratochvil; Martin T Zanni; Steven G Boxer
Journal:  J Phys Chem B       Date:  2017-03-08       Impact factor: 2.991

6.  ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.

Authors:  James A Maier; Carmenza Martinez; Koushik Kasavajhala; Lauren Wickstrom; Kevin E Hauser; Carlos Simmerling
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

7.  Conformational Heterogeneity in the Michaelis Complex of Lactate Dehydrogenase: An Analysis of Vibrational Spectroscopy Using Markov and Hidden Markov Models.

Authors:  Xiaoliang Pan; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2016-07-05       Impact factor: 2.991

8.  Vibrational Stark Effects of Carbonyl Probes Applied to Reinterpret IR and Raman Data for Enzyme Inhibitors in Terms of Electric Fields at the Active Site.

Authors:  Samuel H Schneider; Steven G Boxer
Journal:  J Phys Chem B       Date:  2016-08-31       Impact factor: 2.991

9.  Fluorescent Benzocoumarin-π-Extended Styryl Hybrids: Solvatochromism, Excess Dipole Moment, NLO Properties and DFT Study.

Authors:  Umesh Warde; Nagaiyan Sekar
Journal:  J Fluoresc       Date:  2017-11-18       Impact factor: 2.217

Review 10.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

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