Literature DB >> 24298021

Acetylation of the transcriptional repressor Ume6p allows efficient promoter release and timely induction of the meiotic transient transcription program in yeast.

Michael J Law1, Michael J Mallory, Roland L Dunbrack, Randy Strich.   

Abstract

Differentiation programs require strict spatial and temporal control of gene transcription. Genes expressed during meiotic development in Saccharomyces cerevisiae display transient induction and repression. Early meiotic gene (EMG) repression during mitosis is achieved by recruiting both histone deacetylase and chromatin remodeling complexes to their promoters by the zinc cluster DNA binding protein Ume6p. Ume6p repression is relieved by ubiquitin-mediated destruction that is stimulated by Gcn5p-induced acetylation. In this report, we demonstrate that Gcn5p acetylation of separate lysines within the zinc cluster domain negatively impacts Ume6p DNA binding. Mimicking lysine acetylation using glutamine substitution mutations decreased Ume6p binding efficiency and resulted in partial derepression of Ume6p-regulated genes. Consistent with this result, molecular modeling predicted that these lysine side chains are adjacent to the DNA phosphate backbone, suggesting that acetylation inhibits Ume6p binding by electrostatic repulsion. Preventing acetylation did not impact final EMG induction levels during meiosis. However, a delay in EMG induction was observed, which became more severe in later expression classes, ultimately resulting in delayed and reduced execution of the meiotic nuclear divisions. These results indicate that Ume6p acetylation ensures the proper timing of the transient transcription program during meiotic development.

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Year:  2013        PMID: 24298021      PMCID: PMC3911482          DOI: 10.1128/MCB.00256-13

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  65 in total

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Authors:  A Sali; T L Blundell
Journal:  J Mol Biol       Date:  1993-12-05       Impact factor: 5.469

5.  UME6 is a key regulator of nitrogen repression and meiotic development.

Authors:  R Strich; R T Surosky; C Steber; E Dubois; F Messenguy; R E Esposito
Journal:  Genes Dev       Date:  1994-04-01       Impact factor: 11.361

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Journal:  Nature       Date:  1992-04-02       Impact factor: 49.962

7.  Genome-wide analysis of the relationship between transcriptional regulation by Rpd3p and the histone H3 and H4 amino termini in budding yeast.

Authors:  Nevin Sabet; Sam Volo; Cailin Yu; James P Madigan; Randall H Morse
Journal:  Mol Cell Biol       Date:  2004-10       Impact factor: 4.272

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Journal:  Protein Sci       Date:  1995-09       Impact factor: 6.725

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Authors:  R Marmorstein; S C Harrison
Journal:  Genes Dev       Date:  1994-10-15       Impact factor: 11.361

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Authors:  J C Jackson; J M Lopes
Journal:  Nucleic Acids Res       Date:  1996-04-01       Impact factor: 16.971

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  10 in total

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Journal:  J Mol Biol       Date:  2016-10-18       Impact factor: 5.469

2.  Global alterations of the transcriptional landscape during yeast growth and development in the absence of Ume6-dependent chromatin modification.

Authors:  Aurélie Lardenois; Emmanuelle Becker; Thomas Walther; Michael J Law; Bingning Xie; Philippe Demougin; Randy Strich; Michael Primig
Journal:  Mol Genet Genomics       Date:  2015-05-10       Impact factor: 3.291

Review 3.  Protein acetylation and acetyl coenzyme a metabolism in budding yeast.

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Journal:  Eukaryot Cell       Date:  2014-10-17

4.  Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development.

Authors:  Emmanuelle Becker; Yuchen Liu; Aurélie Lardenois; Thomas Walther; Joe Horecka; Igor Stuparevic; Michael J Law; Régis Lavigne; Bertrand Evrard; Philippe Demougin; Michael Riffle; Randy Strich; Ronald W Davis; Charles Pineau; Michael Primig
Journal:  J Proteomics       Date:  2015-02-04       Impact factor: 4.044

5.  The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.

Authors:  Aurélie Lardenois; Igor Stuparevic; Yuchen Liu; Michael J Law; Emmanuelle Becker; Fatima Smagulova; Karl Waern; Marie-Hélène Guilleux; Joe Horecka; Angela Chu; Christine Kervarrec; Randy Strich; Mike Snyder; Ronald W Davis; Lars M Steinmetz; Michael Primig
Journal:  Nucleic Acids Res       Date:  2014-12-03       Impact factor: 16.971

Review 6.  Building a KATalogue of acetyllysine targeting and function.

Authors:  Michael Downey; Kristin Baetz
Journal:  Brief Funct Genomics       Date:  2015-10-27       Impact factor: 4.241

7.  The Pseudokinase Domain of Saccharomyces cerevisiae Tra1 Is Required for Nuclear Localization and Incorporation into the SAGA and NuA4 Complexes.

Authors:  Matthew D Berg; Julie Genereaux; Jim Karagiannis; Christopher J Brandl
Journal:  G3 (Bethesda)       Date:  2018-05-31       Impact factor: 3.154

Review 8.  Sharing Marks: H3K4 Methylation and H2B Ubiquitination as Features of Meiotic Recombination and Transcription.

Authors:  Joan Serrano-Quílez; Sergi Roig-Soucase; Susana Rodríguez-Navarro
Journal:  Int J Mol Sci       Date:  2020-06-25       Impact factor: 5.923

9.  Eukaryotic translation factor eIF5A contributes to acetic acid tolerance in Saccharomyces cerevisiae via transcriptional factor Ume6p.

Authors:  Yanfei Cheng; Hui Zhu; Zhengda Du; Xuena Guo; Chenyao Zhou; Zhaoyue Wang; Xiuping He
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10.  Distinct requirements for the COMPASS core subunits Set1, Swd1, and Swd3 during meiosis in the budding yeast Saccharomyces cerevisiae.

Authors:  Brandon M Trainor; Kerri Ciccaglione; Miranda Czymek; Michael J Law
Journal:  G3 (Bethesda)       Date:  2021-10-19       Impact factor: 3.154

  10 in total

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