Literature DB >> 27769718

Choose Your Own Adventure: The Role of Histone Modifications in Yeast Cell Fate.

Deepika Jaiswal1, Rashi Turniansky2, Erin M Green3.   

Abstract

When yeast cells are challenged by a fluctuating environment, signaling networks activate differentiation programs that promote their individual or collective survival. These programs include the initiation of meiotic sporulation, the formation of filamentous growth structures, and the activation of programmed cell death pathways. The establishment and maintenance of these distinct cell fates are driven by massive gene expression programs that promote the necessary changes in morphology and physiology. While these genomic reprogramming events depend on a specialized network of transcription factors, a diverse set of chromatin regulators, including histone-modifying enzymes, chromatin remodelers, and histone variants, also play essential roles. Here, we review the broad functions of histone modifications in initiating cell fate transitions, with particular focus on their contribution to the control of expression of key genes required for the differentiation programs and chromatin reorganization that accompanies these cell fates.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  chromatin; meiosis; post-translational modifications; programmed cell death; pseudohyphal growth

Mesh:

Substances:

Year:  2016        PMID: 27769718      PMCID: PMC5395361          DOI: 10.1016/j.jmb.2016.10.018

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  148 in total

1.  Bakers' yeast, a model for fungal biofilm formation.

Authors:  T B Reynolds; G R Fink
Journal:  Science       Date:  2001-02-02       Impact factor: 47.728

2.  Maintenance of low histone ubiquitylation by Ubp10 correlates with telomere-proximal Sir2 association and gene silencing.

Authors:  N C Tolga Emre; Kristin Ingvarsdottir; Anastasia Wyce; Adam Wood; Nevan J Krogan; Karl W Henry; Keqin Li; Ronen Marmorstein; Jack F Greenblatt; Ali Shilatifard; Shelley L Berger
Journal:  Mol Cell       Date:  2005-02-18       Impact factor: 17.970

3.  The Tup1-Ssn6 general repressor is involved in repression of IME1 encoding a transcriptional activator of meiosis in Saccharomyces cerevisiae.

Authors:  T Mizuno; N Nakazawa; P Remgsamrarn; T Kunoh; Y Oshima; S Harashima
Journal:  Curr Genet       Date:  1998-04       Impact factor: 3.886

4.  Histone H4 lysine 20 of Saccharomyces cerevisiae is monomethylated and functions in subtelomeric silencing.

Authors:  Christopher R Edwards; Weiwei Dang; Shelley L Berger
Journal:  Biochemistry       Date:  2011-11-11       Impact factor: 3.162

Review 5.  Chromatin features and the epigenetic regulation of pluripotency states in ESCs.

Authors:  Wee-Wei Tee; Danny Reinberg
Journal:  Development       Date:  2014-06       Impact factor: 6.868

6.  The core meiotic transcriptome in budding yeasts.

Authors:  M Primig; R M Williams; E A Winzeler; G G Tevzadze; A R Conway; S Y Hwang; R W Davis; R E Esposito
Journal:  Nat Genet       Date:  2000-12       Impact factor: 38.330

7.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

8.  Demethylation of trimethylated histone H3 Lys4 in vivo by JARID1 JmjC proteins.

Authors:  David J Seward; Gabrielle Cubberley; Soojin Kim; Matt Schonewald; Lian Zhang; Brian Tripet; David L Bentley
Journal:  Nat Struct Mol Biol       Date:  2007-02-18       Impact factor: 15.369

Review 9.  Control of meiotic gene expression in Saccharomyces cerevisiae.

Authors:  A P Mitchell
Journal:  Microbiol Rev       Date:  1994-03

10.  Nutrient Control of Yeast Gametogenesis Is Mediated by TORC1, PKA and Energy Availability.

Authors:  Hilla Weidberg; Fabien Moretto; Gianpiero Spedale; Angelika Amon; Folkert J van Werven
Journal:  PLoS Genet       Date:  2016-06-06       Impact factor: 5.917

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  14 in total

1.  Chromatin Immunoprecipitation (ChIP) of Histone Modifications from Saccharomyces cerevisiae.

Authors:  Meagan Jezek; Alison Jacques; Deepika Jaiswal; Erin M Green
Journal:  J Vis Exp       Date:  2017-12-29       Impact factor: 1.355

2.  Using Yeast to Define the Regulatory Role of Protein Lysine Methylation.

Authors:  Yogita Jethmalani; Erin M Green
Journal:  Curr Protein Pept Sci       Date:  2020       Impact factor: 3.272

Review 3.  Gene repression in S. cerevisiae-looking beyond Sir-dependent gene silencing.

Authors:  Safia Mahabub Sauty; Kholoud Shaban; Krassimir Yankulov
Journal:  Curr Genet       Date:  2020-10-10       Impact factor: 3.886

Review 4.  SET domains and stress: uncovering new functions for yeast Set4.

Authors:  Khoa Tran; Erin M Green
Journal:  Curr Genet       Date:  2018-12-06       Impact factor: 3.886

Review 5.  Mechanisms of gene regulation by histone degradation in adaptation of yeast: an overview of recent advances.

Authors:  Safir Ullah Khan; Munir Ullah Khan; Fadia Kalsoom; Muhammad Imran Khan; Shuang Gao; Ahsanullah Unar; Muhammad Zubair; Muhammad Bilal
Journal:  Arch Microbiol       Date:  2022-04-28       Impact factor: 2.552

6.  Set4 is a chromatin-associated protein, promotes survival during oxidative stress, and regulates stress response genes in yeast.

Authors:  Khoa Tran; Yogita Jethmalani; Deepika Jaiswal; Erin M Green
Journal:  J Biol Chem       Date:  2018-08-06       Impact factor: 5.157

7.  Repression of Middle Sporulation Genes in Saccharomyces cerevisiae by the Sum1-Rfm1-Hst1 Complex Is Maintained by Set1 and H3K4 Methylation.

Authors:  Deepika Jaiswal; Meagan Jezek; Jeremiah Quijote; Joanna Lum; Grace Choi; Rushmie Kulkarni; DoHwan Park; Erin M Green
Journal:  G3 (Bethesda)       Date:  2017-12-04       Impact factor: 3.154

Review 8.  The Emerging Role of the Cytoskeleton in Chromosome Dynamics.

Authors:  Maya Spichal; Emmanuelle Fabre
Journal:  Front Genet       Date:  2017-05-19       Impact factor: 4.599

Review 9.  Histone Modifications and the Maintenance of Telomere Integrity.

Authors:  Meagan Jezek; Erin M Green
Journal:  Cells       Date:  2019-02-25       Impact factor: 6.600

10.  Pseudohyphal differentiation in Komagataella phaffii: investigating the FLO gene family.

Authors:  Sonakshi De; Corinna Rebnegger; Josef Moser; Nadine Tatto; Alexandra B Graf; Diethard Mattanovich; Brigitte Gasser
Journal:  FEMS Yeast Res       Date:  2020-08-01       Impact factor: 2.923

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