Literature DB >> 24297312

Viscosity and drag force involved in organelle transport: investigation of the fluctuation dissipation theorem.

K Hayashi1, C G Pack, M K Sato, K Mouri, K Kaizu, K Takahashi, Y Okada.   

Abstract

We observed the motion of an organelle transported by motor proteins in cells using fluorescence microscopy. Particularly, among organelles, the mitochondria in PC12 cells were studied. A mitochondrion was dragged at a constant speed for several seconds without pausing. We investigated the fluctuation dissipation theorem for this constant drag motion by comparing it with the motion of Brownian beads that were incorporated into the cells by an electroporation method. We estimated the viscosity value inside cells from the diffusion coefficients of the beads. Then the viscosity value obtained by using the beads was found to be slightly lower than that obtained from the diffusion coefficient for the organelle motion via the Einstein relation. This discrepancy indicates the violation of the Einstein relation for the organelle motion.

Mesh:

Year:  2013        PMID: 24297312     DOI: 10.1140/epje/i2013-13136-6

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  19 in total

1.  Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality.

Authors:  Jan Liphardt; Sophie Dumont; Steven B Smith; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2002-06-07       Impact factor: 47.728

2.  Torque generation and utilization in motor enzyme F0F1-ATP synthase: half-torque F1 with short-sized pushrod helix and reduced ATP Synthesis by half-torque F0F1.

Authors:  Eiji Usukura; Toshiharu Suzuki; Shou Furuike; Naoki Soga; Ei-Ichiro Saita; Toru Hisabori; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  J Biol Chem       Date:  2011-11-28       Impact factor: 5.157

3.  Fluctuation theorem applied to F1-ATPase.

Authors:  Kumiko Hayashi; Hiroshi Ueno; Ryota Iino; Hiroyuki Noji
Journal:  Phys Rev Lett       Date:  2010-05-28       Impact factor: 9.161

4.  Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies.

Authors:  D Collin; F Ritort; C Jarzynski; S B Smith; I Tinoco; C Bustamante
Journal:  Nature       Date:  2005-09-08       Impact factor: 49.962

5.  Accurate sizing of nanoparticles using confocal correlation spectroscopy.

Authors:  Christopher L Kuyper; Bryant S Fujimoto; Yiqiong Zhao; Perry G Schiro; Daniel T Chiu
Journal:  J Phys Chem B       Date:  2006-12-07       Impact factor: 2.991

6.  Microenvironments and different nanoparticle dynamics in living cells revealed by a standard nanoparticle.

Authors:  Chan Gi Pack; Mi Ryoung Song; Eunju Lee Tae; Michio Hiroshima; Kyung Hee Byun; Jun Sung Kim; Yasushi Sako
Journal:  J Control Release       Date:  2012-08-16       Impact factor: 9.776

7.  Consequences of motor copy number on the intracellular transport of kinesin-1-driven lipid droplets.

Authors:  George T Shubeita; Susan L Tran; Jing Xu; Michael Vershinin; Silvia Cermelli; Sean L Cotton; Michael A Welte; Steven P Gross
Journal:  Cell       Date:  2008-12-12       Impact factor: 41.582

8.  Role of the DELSEED loop in torque transmission of F1-ATPase.

Authors:  Mizue Tanigawara; Kazuhito V Tabata; Yuko Ito; Jotaro Ito; Rikiya Watanabe; Hiroshi Ueno; Mitsunori Ikeguchi; Hiroyuki Noji
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

Review 9.  Mitochondrial transport and docking in axons.

Authors:  Qian Cai; Zu-Hang Sheng
Journal:  Exp Neurol       Date:  2009-03-31       Impact factor: 5.330

10.  Establishment of a noradrenergic clonal line of rat adrenal pheochromocytoma cells which respond to nerve growth factor.

Authors:  L A Greene; A S Tischler
Journal:  Proc Natl Acad Sci U S A       Date:  1976-07       Impact factor: 11.205

View more
  5 in total

Review 1.  Application of the fluctuation theorem to motor proteins: from F1-ATPase to axonal cargo transport by kinesin and dynein.

Authors:  Kumiko Hayashi
Journal:  Biophys Rev       Date:  2018-07-17

2.  F-subunit reinforces torque generation in V-ATPase.

Authors:  Jun-ichi Kishikawa; Akihiko Seino; Atsuko Nakanishi; Naciye Esma Tirtom; Hiroyuki Noji; Ken Yokoyama; Kumiko Hayashi
Journal:  Eur Biophys J       Date:  2014-07-11       Impact factor: 1.733

3.  Effects of dynein inhibitor on the number of motor proteins transporting synaptic cargos.

Authors:  Kumiko Hayashi; Miki G Miyamoto; Shinsuke Niwa
Journal:  Biophys J       Date:  2021-02-20       Impact factor: 4.033

4.  Investigation of multiple-dynein transport of melanosomes by non-invasive force measurement using fluctuation unit χ.

Authors:  Shin Hasegawa; Takashi Sagawa; Kazuho Ikeda; Yasushi Okada; Kumiko Hayashi
Journal:  Sci Rep       Date:  2019-03-25       Impact factor: 4.379

5.  Application of the fluctuation theorem for noninvasive force measurement in living neuronal axons.

Authors:  Kumiko Hayashi; Yuta Tsuchizawa; Mitsuhiro Iwaki; Yasushi Okada
Journal:  Mol Biol Cell       Date:  2018-10-03       Impact factor: 4.138

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.