Literature DB >> 30019204

Application of the fluctuation theorem to motor proteins: from F1-ATPase to axonal cargo transport by kinesin and dynein.

Kumiko Hayashi1.   

Abstract

The fluctuation theorem is a representative theorem in non-equilibrium statistical physics actively studied in the 1990s. Relating to entropy production in non-equilibrium states, the theorem has been used to estimate the driving power of motor proteins from fluctuation in their motion. In this review, usage of the fluctuation theorem in experiments on motor proteins is illustrated for biologists, especially those who study mechanobiology, in which force measurement is a central issue. We first introduce the application of the fluctuation theorem in measuring the rotary torque of the rotary motor protein F1-ATPase. Next, as an extension of this application, a recent trial estimating the force generated during cargo transport in vivo by the microtubule motors kinesin and dynein is introduced. Elucidation of the physical mechanism of such transport is important, especially for neurons, in which deficits in cargo transport are deeply related to neuronal diseases. Finally, perspectives on the fluctuation theorem as a new technique in the field of neuroscience are discussed.

Entities:  

Keywords:  Cellular cargo transport; Fluctuation theorem; Mechanobiology; Motor proteins; Neuronal disease; Non-invasive force measurement

Year:  2018        PMID: 30019204      PMCID: PMC6233339          DOI: 10.1007/s12551-018-0440-5

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  45 in total

1.  Purine but not pyrimidine nucleotides support rotation of F(1)-ATPase.

Authors:  H Noji; D Bald; R Yasuda; H Itoh; M Yoshida; K Kinosita
Journal:  J Biol Chem       Date:  2001-03-28       Impact factor: 5.157

2.  Probability of second law violations in shearing steady states.

Authors: 
Journal:  Phys Rev Lett       Date:  1993-10-11       Impact factor: 9.161

Review 3.  Molecular motors in neurons: transport mechanisms and roles in brain function, development, and disease.

Authors:  Nobutaka Hirokawa; Shinsuke Niwa; Yosuke Tanaka
Journal:  Neuron       Date:  2010-11-18       Impact factor: 17.173

4.  Fluctuation theorem applied to F1-ATPase.

Authors:  Kumiko Hayashi; Hiroshi Ueno; Ryota Iino; Hiroyuki Noji
Journal:  Phys Rev Lett       Date:  2010-05-28       Impact factor: 9.161

5.  Direct observation of steps in rotation of the bacterial flagellar motor.

Authors:  Yoshiyuki Sowa; Alexander D Rowe; Mark C Leake; Toshiharu Yakushi; Michio Homma; Akihiko Ishijima; Richard M Berry
Journal:  Nature       Date:  2005-10-06       Impact factor: 49.962

6.  The C. elegans unc-104 gene encodes a putative kinesin heavy chain-like protein.

Authors:  A J Otsuka; A Jeyaprakash; J García-Añoveros; L Z Tang; G Fisk; T Hartshorne; R Franco; T Born
Journal:  Neuron       Date:  1991-01       Impact factor: 17.173

Review 7.  Kinesin superfamily motor proteins and intracellular transport.

Authors:  Nobutaka Hirokawa; Yasuko Noda; Yosuke Tanaka; Shinsuke Niwa
Journal:  Nat Rev Mol Cell Biol       Date:  2009-10       Impact factor: 94.444

8.  High-speed angle-resolved imaging of a single gold nanorod with microsecond temporal resolution and one-degree angle precision.

Authors:  Sawako Enoki; Ryota Iino; Yamato Niitani; Yoshihiro Minagawa; Michio Tomishige; Hiroyuki Noji
Journal:  Anal Chem       Date:  2015-02-03       Impact factor: 6.986

9.  Torque generation of Enterococcus hirae V-ATPase.

Authors:  Hiroshi Ueno; Yoshihiro Minagawa; Mayu Hara; Suhaila Rahman; Ichiro Yamato; Eiro Muneyuki; Hiroyuki Noji; Takeshi Murata; Ryota Iino
Journal:  J Biol Chem       Date:  2014-09-25       Impact factor: 5.157

10.  Role of the DELSEED loop in torque transmission of F1-ATPase.

Authors:  Mizue Tanigawara; Kazuhito V Tabata; Yuko Ito; Jotaro Ito; Rikiya Watanabe; Hiroshi Ueno; Mitsunori Ikeguchi; Hiroyuki Noji
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

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  3 in total

Review 1.  Physical parameters describing neuronal cargo transport by kinesin UNC-104.

Authors:  Kumiko Hayashi; Shiori Matsumoto; Miki G Miyamoto; Shinsuke Niwa
Journal:  Biophys Rev       Date:  2019-05-21

2.  Effects of dynein inhibitor on the number of motor proteins transporting synaptic cargos.

Authors:  Kumiko Hayashi; Miki G Miyamoto; Shinsuke Niwa
Journal:  Biophys J       Date:  2021-02-20       Impact factor: 4.033

3.  Investigation of multiple-dynein transport of melanosomes by non-invasive force measurement using fluctuation unit χ.

Authors:  Shin Hasegawa; Takashi Sagawa; Kazuho Ikeda; Yasushi Okada; Kumiko Hayashi
Journal:  Sci Rep       Date:  2019-03-25       Impact factor: 4.379

  3 in total

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