Literature DB >> 24256506

Design space for complex DNA structures.

Bryan Wei1, Mingjie Dai, Cameron Myhrvold, Yonggang Ke, Ralf Jungmann, Peng Yin.   

Abstract

Nucleic acids have emerged as effective materials for assembling complex nanoscale structures. To tailor the structures to function optimally for particular applications, a broad structural design space is desired. Despite the many discrete and extended structures demonstrated in the past few decades, the design space remains to be fully explored. In particular, the complex finite-sized structures produced to date have been typically based on a small number of structural motifs. Here, we perform a comprehensive study of the design space for complex DNA structures, using more than 30 distinct motifs derived from single-stranded tiles. These motifs self-assemble to form structures with diverse strand weaving patterns and specific geometric properties, such as curvature and twist. We performed a systematic study to control and characterize the curvature of the structures, and constructed a flat structure with a corrugated strand pattern. The work here reveals the broadness of the design space for complex DNA nanostructures.

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Year:  2013        PMID: 24256506      PMCID: PMC4872871          DOI: 10.1021/ja4062294

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  47 in total

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Authors:  J H Chen; N C Seeman
Journal:  Nature       Date:  1991-04-18       Impact factor: 49.962

2.  Engineering a 2D protein-DNA crystal.

Authors:  Jonathan Malo; James C Mitchell; Catherine Vénien-Bryan; J Robin Harris; Holger Wille; David J Sherratt; Andrew J Turberfield
Journal:  Angew Chem Int Ed Engl       Date:  2005-05-13       Impact factor: 15.336

3.  Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication.

Authors:  R P Goodman; I A T Schaap; C F Tardin; C M Erben; R M Berry; C F Schmidt; A J Turberfield
Journal:  Science       Date:  2005-12-09       Impact factor: 47.728

4.  Finite-size, fully addressable DNA tile lattices formed by hierarchical assembly procedures.

Authors:  Sung Ha Park; Constantin Pistol; Sang Jung Ahn; John H Reif; Alvin R Lebeck; Chris Dwyer; Thomas H LaBean
Journal:  Angew Chem Int Ed Engl       Date:  2006-01-23       Impact factor: 15.336

5.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

6.  Programming biomolecular self-assembly pathways.

Authors:  Peng Yin; Harry M T Choi; Colby R Calvert; Niles A Pierce
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

7.  Conformational flexibility facilitates self-assembly of complex DNA nanostructures.

Authors:  Chuan Zhang; Min Su; Yu He; Xin Zhao; Ping-an Fang; Alexander E Ribbe; Wen Jiang; Chengde Mao
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-30       Impact factor: 11.205

8.  DNA gridiron nanostructures based on four-arm junctions.

Authors:  Dongran Han; Suchetan Pal; Yang Yang; Shuoxing Jiang; Jeanette Nangreave; Yan Liu; Hao Yan
Journal:  Science       Date:  2013-03-22       Impact factor: 47.728

9.  Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra.

Authors:  Yu He; Tao Ye; Min Su; Chuan Zhang; Alexander E Ribbe; Wen Jiang; Chengde Mao
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

10.  Multilayer DNA origami packed on a square lattice.

Authors:  Yonggang Ke; Shawn M Douglas; Minghui Liu; Jaswinder Sharma; Anchi Cheng; Albert Leung; Yan Liu; William M Shih; Hao Yan
Journal:  J Am Chem Soc       Date:  2009-11-04       Impact factor: 15.419

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  10 in total

1.  Rational design of self-assembly pathways for complex multicomponent structures.

Authors:  William M Jacobs; Aleks Reinhardt; Daan Frenkel
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-04       Impact factor: 11.205

2.  A Compact DNA Cube with Side Length 10 nm.

Authors:  Max B Scheible; Luvena L Ong; Johannes B Woehrstein; Ralf Jungmann; Peng Yin; Friedrich C Simmel
Journal:  Small       Date:  2015-08-21       Impact factor: 13.281

3.  Complex reconfiguration of DNA nanostructures.

Authors:  Bryan Wei; Luvena L Ong; Jeffrey Chen; Alexander S Jaffe; Peng Yin
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-04       Impact factor: 15.336

4.  Design and synthesis of pleated DNA origami nanotubes with adjustable diameters.

Authors:  Jonathan F Berengut; Julian C Berengut; Jonathan P K Doye; Domen Prešern; Akihiro Kawamoto; Juanfang Ruan; Madeleine J Wainwright; Lawrence K Lee
Journal:  Nucleic Acids Res       Date:  2019-12-16       Impact factor: 16.971

5.  Suppressing high-dimensional crystallographic defects for ultra-scaled DNA arrays.

Authors:  Yahong Chen; Chaoyong Yang; Zhi Zhu; Wei Sun
Journal:  Nat Commun       Date:  2022-05-16       Impact factor: 17.694

6.  DNA brick crystals with prescribed depths.

Authors:  Yonggang Ke; Luvena L Ong; Wei Sun; Jie Song; Mingdong Dong; William M Shih; Peng Yin
Journal:  Nat Chem       Date:  2014-10-19       Impact factor: 24.427

7.  Self-assembly of fully addressable DNA nanostructures from double crossover tiles.

Authors:  Wen Wang; Tong Lin; Suoyu Zhang; Tanxi Bai; Yongli Mi; Bryan Wei
Journal:  Nucleic Acids Res       Date:  2016-08-02       Impact factor: 16.971

8.  DNA nanostructures constructed with multi-stranded motifs.

Authors:  Donglei Yang; Zhenyu Tan; Yongli Mi; Bryan Wei
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

9.  DNA Origami Reorganizes upon Interaction with Graphite: Implications for High-Resolution DNA Directed Protein Patterning.

Authors:  Masudur Rahman; David Neff; Nathaniel Green; Michael L Norton
Journal:  Nanomaterials (Basel)       Date:  2016-10-31       Impact factor: 5.076

10.  Complex wireframe DNA nanostructures from simple building blocks.

Authors:  Wen Wang; Silian Chen; Byoungkwon An; Kai Huang; Tanxi Bai; Mengyuan Xu; Gaëtan Bellot; Yonggang Ke; Ye Xiang; Bryan Wei
Journal:  Nat Commun       Date:  2019-03-06       Impact factor: 14.919

  10 in total

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