Literature DB >> 24252429

Contemporary, yeast-based approaches to understanding human genetic variation.

Maitreya J Dunham1, Douglas M Fowler.   

Abstract

Determining how genetic variation contributes to human health and disease is a critical challenge. As one of the most genetically tractable model organisms, yeast has played a central role in meeting this challenge. The advent of new technologies, including high-throughput DNA sequencing and synthesis, proteomics, and computational methods, has vastly increased the power of yeast-based approaches to determine the consequences of human genetic variation. Recent successes include systematic exploration of the effects of gene dosage, large-scale analysis of the effect of coding variation on gene function, and the use of humanized yeast to model disease. By virtue of its manipulability, small genome size, and genetic tractability, yeast is poised to help us understand human genetic variation.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24252429      PMCID: PMC3864666          DOI: 10.1016/j.gde.2013.10.001

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  66 in total

1.  Monitoring protein-protein interactions between the mammalian integral membrane transporters and PDZ-interacting partners using a modified split-ubiquitin membrane yeast two-hybrid system.

Authors:  Serge M Gisler; Saranya Kittanakom; Daniel Fuster; Victoria Wong; Mia Bertic; Tamara Radanovic; Randy A Hall; Heini Murer; Jürg Biber; Daniel Markovich; Orson W Moe; Igor Stagljar
Journal:  Mol Cell Proteomics       Date:  2008-04-11       Impact factor: 5.911

2.  Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast.

Authors:  Adam M Deutschbauer; Daniel F Jaramillo; Michael Proctor; Jochen Kumm; Maureen E Hillenmeyer; Ronald W Davis; Corey Nislow; Guri Giaever
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

3.  Synthetic chromosome arms function in yeast and generate phenotypic diversity by design.

Authors:  Jessica S Dymond; Sarah M Richardson; Candice E Coombes; Timothy Babatz; Héloïse Muller; Narayana Annaluru; William J Blake; Joy W Schwerzmann; Junbiao Dai; Derek L Lindstrom; Annabel C Boeke; Daniel E Gottschling; Srinivasan Chandrasegaran; Joel S Bader; Jef D Boeke
Journal:  Nature       Date:  2011-09-14       Impact factor: 49.962

4.  A streamlined process to phenotypically profile heterologous cDNAs in parallel using yeast cell-based assays.

Authors:  S Tugendreich; E Perkins; J Couto; P Barthmaier; D Sun; S Tang; S Tulac; A Nguyen; E Yeh; A Mays; E Wallace; T Lila; D Shivak; M Prichard; L Andrejka; R Kim; T Melese
Journal:  Genome Res       Date:  2001-11       Impact factor: 9.043

5.  A novel genetic system to detect protein-protein interactions.

Authors:  S Fields; O Song
Journal:  Nature       Date:  1989-07-20       Impact factor: 49.962

6.  A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds.

Authors:  Cheuk Hei Ho; Leslie Magtanong; Sarah L Barker; David Gresham; Shinichi Nishimura; Paramasivam Natarajan; Judice L Y Koh; Justin Porter; Christopher A Gray; Raymond J Andersen; Guri Giaever; Corey Nislow; Brenda Andrews; David Botstein; Todd R Graham; Minoru Yoshida; Charles Boone
Journal:  Nat Biotechnol       Date:  2009-04-06       Impact factor: 54.908

7.  Understanding the function-structure and function-mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis.

Authors:  Shunsuke Kato; Shuang-Yin Han; Wen Liu; Kazunori Otsuka; Hiroyuki Shibata; Ryunosuke Kanamaru; Chikashi Ishioka
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-25       Impact factor: 11.205

Review 8.  Rescuing yeast mutants with human genes.

Authors:  Michael J Osborn; J Ross Miller
Journal:  Brief Funct Genomic Proteomic       Date:  2007-08-13

9.  Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape.

Authors:  Daniel J Kvitek; Gavin Sherlock
Journal:  PLoS Genet       Date:  2011-04-28       Impact factor: 5.917

10.  Pathogenic mechanism of the FIG4 mutation responsible for Charcot-Marie-Tooth disease CMT4J.

Authors:  Guy M Lenk; Cole J Ferguson; Clement Y Chow; Natsuko Jin; Julie M Jones; Adrienne E Grant; Sergey N Zolov; Jesse J Winters; Roman J Giger; James J Dowling; Lois S Weisman; Miriam H Meisler
Journal:  PLoS Genet       Date:  2011-06-02       Impact factor: 5.917

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  19 in total

1.  A yeast-based complementation assay elucidates the functional impact of 200 missense variants in human PSAT1.

Authors:  Amy Sirr; Russell S Lo; Gareth A Cromie; Adrian C Scott; Julee Ashmead; Mirutse Heyesus; Aimée M Dudley
Journal:  J Inherit Metab Dis       Date:  2020-02-27       Impact factor: 4.982

2.  Yeast cells expressing the human mitochondrial DNA polymerase reveal correlations between polymerase fidelity and human disease progression.

Authors:  Yufeng Qian; Aashiq H Kachroo; Christopher M Yellman; Edward M Marcotte; Kenneth A Johnson
Journal:  J Biol Chem       Date:  2014-01-07       Impact factor: 5.157

Review 3.  The laboratory domestication of Caenorhabditis elegans.

Authors:  Mark G Sterken; L Basten Snoek; Jan E Kammenga; Erik C Andersen
Journal:  Trends Genet       Date:  2015-03-21       Impact factor: 11.639

4.  Systems biology and the analysis of genetic variation.

Authors:  Shamil R Sunyaev; Frederick P Roth
Journal:  Curr Opin Genet Dev       Date:  2013-11-28       Impact factor: 5.578

Review 5.  Applications of comparative evolution to human disease genetics.

Authors:  Claire D McWhite; Benjamin J Liebeskind; Edward M Marcotte
Journal:  Curr Opin Genet Dev       Date:  2015-09-04       Impact factor: 5.578

6.  Combining natural sequence variation with high throughput mutational data to reveal protein interaction sites.

Authors:  Daniel Melamed; David L Young; Christina R Miller; Stanley Fields
Journal:  PLoS Genet       Date:  2015-02-11       Impact factor: 5.917

Review 7.  Efforts to make and apply humanized yeast.

Authors:  Jon M Laurent; Jonathan H Young; Aashiq H Kachroo; Edward M Marcotte
Journal:  Brief Funct Genomics       Date:  2015-10-13       Impact factor: 4.241

8.  Scope and limitations of yeast as a model organism for studying human tissue-specific pathways.

Authors:  Shahin Mohammadi; Baharak Saberidokht; Shankar Subramaniam; Ananth Grama
Journal:  BMC Syst Biol       Date:  2015-12-29

9.  Complementation of Yeast Genes with Human Genes as an Experimental Platform for Functional Testing of Human Genetic Variants.

Authors:  Akil Hamza; Erik Tammpere; Megan Kofoed; Christelle Keong; Jennifer Chiang; Guri Giaever; Corey Nislow; Philip Hieter
Journal:  Genetics       Date:  2015-09-09       Impact factor: 4.562

10.  An amebic protein disulfide isomerase (PDI) complements the yeast PDI1 mutation but is unable to support cell viability under ER or thermal stress.

Authors:  Rosa E Mares; Marco A Ramos
Journal:  FEBS Open Bio       Date:  2017-11-29       Impact factor: 2.693

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