Literature DB >> 26338499

Applications of comparative evolution to human disease genetics.

Claire D McWhite1, Benjamin J Liebeskind1, Edward M Marcotte2.   

Abstract

Direct comparison of human diseases with model phenotypes allows exploration of key areas of human biology which are often inaccessible for practical or ethical reasons. We review recent developments in comparative evolutionary approaches for finding models for genetic disease, including high-throughput generation of gene/phenotype relationship data, the linking of orthologous genes and phenotypes across species, and statistical methods for linking human diseases to model phenotypes.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Year:  2015        PMID: 26338499      PMCID: PMC4947381          DOI: 10.1016/j.gde.2015.08.004

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  88 in total

1.  Computational genetics: finding protein function by nonhomology methods.

Authors:  E M Marcotte
Journal:  Curr Opin Struct Biol       Date:  2000-06       Impact factor: 6.809

2.  From yeast to patient neurons and back again: powerful new discovery platform.

Authors:  Daniel F Tardiff; Vikram Khurana; Chee Yeun Chung; Susan Lindquist
Journal:  Mov Disord       Date:  2014-08-14       Impact factor: 10.338

3.  A framework for comparing phenotype annotations of orthologous genes.

Authors:  Olivier Bodenreider; Anita Burgun
Journal:  Stud Health Technol Inform       Date:  2010

Review 4.  The many faces of α-synuclein: from structure and toxicity to therapeutic target.

Authors:  Hilal A Lashuel; Cassia R Overk; Abid Oueslati; Eliezer Masliah
Journal:  Nat Rev Neurosci       Date:  2013-01       Impact factor: 34.870

5.  The genetic landscape of a cell.

Authors:  Michael Costanzo; Anastasia Baryshnikova; Jeremy Bellay; Yungil Kim; Eric D Spear; Carolyn S Sevier; Huiming Ding; Judice L Y Koh; Kiana Toufighi; Sara Mostafavi; Jeany Prinz; Robert P St Onge; Benjamin VanderSluis; Taras Makhnevych; Franco J Vizeacoumar; Solmaz Alizadeh; Sondra Bahr; Renee L Brost; Yiqun Chen; Murat Cokol; Raamesh Deshpande; Zhijian Li; Zhen-Yuan Lin; Wendy Liang; Michaela Marback; Jadine Paw; Bryan-Joseph San Luis; Ermira Shuteriqi; Amy Hin Yan Tong; Nydia van Dyk; Iain M Wallace; Joseph A Whitney; Matthew T Weirauch; Guoqing Zhong; Hongwei Zhu; Walid A Houry; Michael Brudno; Sasan Ragibizadeh; Balázs Papp; Csaba Pál; Frederick P Roth; Guri Giaever; Corey Nislow; Olga G Troyanskaya; Howard Bussey; Gary D Bader; Anne-Claude Gingras; Quaid D Morris; Philip M Kim; Chris A Kaiser; Chad L Myers; Brenda J Andrews; Charles Boone
Journal:  Science       Date:  2010-01-22       Impact factor: 47.728

6.  Deep mutational scanning: a new style of protein science.

Authors:  Douglas M Fowler; Stanley Fields
Journal:  Nat Methods       Date:  2014-08       Impact factor: 28.547

7.  MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score.

Authors:  Leszek P Pryszcz; Jaime Huerta-Cepas; Toni Gabaldón
Journal:  Nucleic Acids Res       Date:  2010-12-11       Impact factor: 16.971

8.  Rock, paper, scissors: harnessing complementarity in ortholog detection methods improves comparative genomic inference.

Authors:  M Cyrus Maher; Ryan D Hernandez
Journal:  G3 (Bethesda)       Date:  2015-02-23       Impact factor: 3.154

9.  Evolutionary profiling reveals the heterogeneous origins of classes of human disease genes: implications for modeling disease genetics in animals.

Authors:  Evan K Maxwell; Christine E Schnitzler; Paul Havlak; Nicholas H Putnam; Anh-Dao Nguyen; R Travis Moreland; Andreas D Baxevanis
Journal:  BMC Evol Biol       Date:  2014-10-04       Impact factor: 3.260

10.  Phylogenetic and functional assessment of orthologs inference projects and methods.

Authors:  Adrian M Altenhoff; Christophe Dessimoz
Journal:  PLoS Comput Biol       Date:  2009-01-16       Impact factor: 4.475

View more
  4 in total

Review 1.  Humanized yeast to model human biology, disease and evolution.

Authors:  Aashiq H Kachroo; Michelle Vandeloo; Brittany M Greco; Mudabir Abdullah
Journal:  Dis Model Mech       Date:  2022-06-06       Impact factor: 5.732

Review 2.  Multifactorial theory applied to the neurotoxicity of paraquat and paraquat-induced mechanisms of developing Parkinson's disease.

Authors:  Xiao-Feng Zhang; Mark Thompson; Yi-Hua Xu
Journal:  Lab Invest       Date:  2016-02-01       Impact factor: 5.662

Review 3.  Integrins in disguise - mechanosensors in Saccharomyces cerevisiae as functional integrin analogues.

Authors:  Tarek Elhasi; Anders Blomberg
Journal:  Microb Cell       Date:  2019-07-15

4.  Gearing up to handle the mosaic nature of life in the quest for orthologs.

Authors:  Kristoffer Forslund; Cecile Pereira; Salvador Capella-Gutierrez; Alan Sousa da Silva; Adrian Altenhoff; Jaime Huerta-Cepas; Matthieu Muffato; Mateus Patricio; Klaas Vandepoele; Ingo Ebersberger; Judith Blake; Jesualdo Tomás Fernández Breis; Brigitte Boeckmann; Toni Gabaldón; Erik Sonnhammer; Christophe Dessimoz; Suzanna Lewis
Journal:  Bioinformatics       Date:  2018-01-15       Impact factor: 6.937

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.