| Literature DB >> 24223174 |
Jiali Xu1, Zhiqiang Yin, Hong Shen, Wen Gao, Yingying Qian, Dong Pei, Lingxiang Liu, Yongqian Shu.
Abstract
BACKGROUND: Recent evidence indicates that microRNAs (miRNAs) can function as tumor suppressors and oncogenes. Single nucleotide polymorphisms (SNPs) at miRNA genes can influence the maturation of miRNAs or miRNA-mediated transcriptional regulation. Our objective was to investigate the association of SNPs in deregulated miRNAs with clinical outcome in patients with non-small cell lung cancer (NSCLC) in a Chinese population.Entities:
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Year: 2013 PMID: 24223174 PMCID: PMC3819265 DOI: 10.1371/journal.pone.0079135
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Kaplan-Meier plots of overall survival by clinical parameters, treatment status and pre-miR-27a rs895819 genotypes.
Log-rank P values were (A) <0.001, (B) 0.034, (C) <0.001, (D) <0.001, (E) <0.001 and (F) <0.001, respectively.
Putative SNPs in miRNA sequences.
| Expression status in NSCLC | miRNA | location | polymorphism | Frequency in CHB |
| up | mir-299 | mature | rs41286566 | NA |
| up | mir-605 | premature | rs2043556 | 0.321 |
| down | mir-27a | premature | rs11671784 | NA |
| down | mir-27a | premature | rs895819 | 0.314 |
| down | mir-34a | mature | rs35301225 | NA |
NA, not available.
Genotypes of rs895819 polymorphism and NSCLC patients’ survival.
| Genotype | PatientsN (%) | DeathsN (%) | MST(months) | Log-rank | Crude HR(95% CI) |
| Adjusted HR(95% CI) |
|
| AA | 332(57.6) | 104(31.3) | 46.0 | <0.001 | 1.00 | 1.00 | ||
| AG | 207(35.9) | 85(41.1) | 32.0 | 1.66(1.25–2.22) | 0.001 | 1.72(1.28–2.31) | <0.001 | |
| GG | 37(6.4) | 17(45.9) | 22.0 | 2.24(1.34–3.75) | 0.002 | 1.66(0.98–2.80) | 0.059 | |
| Allelic trend | 1.56(1.27–1.93) | <0.001 | 1.44(1.17–1.77) | 0.001 | ||||
| AA | 332(57.6) | 104(31.3) | 46.0 | <0.001 | 1.00 | 1.00 | ||
| AG/GG | 224(42.4) | 102(41.8) | 32.0 | 1.74(1.32–2.28) | <0.001 | 1.71(1.12–2.26) | <0.001 |
Adjusted for age, sex, smoking status, diabetes mellitus, histology, clinical stage, surgical operation and treatment status.
Results of multivariate Cox regression analysis on NSCLC patients’ survival.
| Variables | β | SE | HR | 95% CI |
|
| Stepwise regressionanalysis | |||||
| Sex (femalevs. male ) | −0.312 | 0.213 | 0.73 | 0.48–1.11 | 0.141 |
| Smoking status (evervs. never) | 0.456 | 0.193 | 1.58 | 1.08–2.30 | 0.018 |
| Diabetes mellitus (yesvs. no) | −0.533 | 0.263 | 0.59 | 0.35–0.98 | 0.042 |
| Clinical stage (III–IVvs. I–II) | 0.196 | 0.250 | 1.22 | 0.76–1.98 | 0.433 |
| Surgical operation(yes vs. no) | −0.969 | 0.236 | 0.38 | 0.24–0.60 | <0.001 |
| Rs895819(AG/GG vs. AA) | 0.555 | 0.143 | 1.74 | 1.32–2.31 | <0.001 |
Stratified analysis for rs895819 genotypes and NSCLC patients’ survival.
| Variables | Deaths/patients | Rs895819(deaths/patients) | |||||||||
| AA | AG+GG | Crude HR(95% CI) |
| Adjusted HR(95% CI) |
|
| |||||
| N | % | N | % | ||||||||
| Total | 206/576 | 104/332 | 50.5/57.6 | 102/224 | 49.5/42.4 | 1.74(1.32–2.28) | <0.001 | 1.71(1.12–2.26) | <0.001 | ||
| Age | 0.691 | ||||||||||
| ≤60 | 92/273 | 53/155 | 57.6/56.8 | 39/118 | 42.4/43.2 | 1.14(0.75–1.72) | 0.547 | 1.02(0.67–1.56) | 0.920 | ||
| >60 | 114/303 | 51/177 | 44.7/58.4 | 63/126 | 55.3/41.6 | 2.48(1.71–3.60) | <0.001 | 2.71(1.84–4.00) | <0.001 | ||
| Sex | 0.480 | ||||||||||
| Male | 147/380 | 70/223 | 47.6/58.7 | 77/157 | 52.4/41.3 | 2.11(1.52–2.92) | <0.001 | 2.05(1.46–2.87) | <0.001 | ||
| Female | 59/196 | 34/109 | 57.6/55.6 | 25/87 | 42.4/44.4 | 1.20(0.71–2.02) | 0.497 | 1.19(0.67–2.09) | 0.558 | ||
| Smoking status | 0.019 | ||||||||||
| Never | 94/309 | 56/192 | 59.6/62.1 | 38/117 | 40.4/37.9 | 1.28(0.85–1.94) | 0.235 | 1.21(0.78–1.87) | 0.395 | ||
| Ever | 112/267 | 48/140 | 42.9/52.4 | 64/127 | 57.1/47.6 | 2.17(1.48–3.17) | <0.001 | 2.08(1.40–3.08) | <0.001 | ||
| Diabetes mellitus | 0.320 | ||||||||||
| None | 190/508 | 99/289 | 52.1/56.9 | 91/219 | 47.9/43.1 | 1.48(1.11–1.97) | 0.007 | 1.53(1.15–2.05) | 0.004 | ||
| Yes | 16/68 | 5/43 | 31.3/63.2 | 11/25 | 68.8/36.8 | 12.9(3.51–47.5) | <0.001 | – | – | ||
| Histology | 0.699 | ||||||||||
| Adenocarcinoma | 127/381 | 65/218 | 51.2/57.2 | 62/163 | 48.8/42.8 | 1.66(1.17–2.36) | 0.005 | 1.73(1.19–2.49) | 0.004 | ||
| Squamous Cell | 71/166 | 38/99 | 53.5/59.6 | 33/67 | 46.540.4 | 1.85(1.15–2.97) | 0.011 | 1.34(0.81–2.20) | 0.254 | ||
| Others | 8/29 | 1/15 | 12.5/51.7 | 7/14 | 87.5/48.3 | 7.69(0.94–63.0) | 0.058 | – | – | ||
| Clinical stage | 0.599 | ||||||||||
| I | 21/104 | 11/66 | 52.4/63.5 | 10/38 | 47.6/36.5 | 1.89(0.80–4.45) | 0.147 | 1.32(0.50–3.48) | 0.573 | ||
| II | 32/97 | 17/65 | 53.1/56.7 | 15/42 | 46.9/43.3 | 1.28(0.63–2.60) | 0.492 | 1.41(0.63–3.15) | 0.400 | ||
| III | 38/102 | 17/56 | 44.7/54.9 | 21/46 | 55.3/45.1 | 2.23(1.17–4.25) | 0.014 | 1.58(0.71–3.51) | 0.261 | ||
| IV | 115/273 | 59/155 | 51.3/56.8 | 56/118 | 48.7/43.2 | 1.75(1.20–2.54) | 0.004 | 1.42(0.97–2.10) | 0.074 | ||
| Surgical operation | 0.315 | ||||||||||
| None | 140/326 | 70/182 | 50.0/55.8 | 70/144 | 50.0/44.2 | 1.77(1.26–2.49) | 0.001 | 1.67(1.18–2.36) | 0.004 | ||
| Yes | 66/250 | 34/150 | 51.5/60.0 | 32/100 | 48.5/40.0 | 1.69(1.04–2.74) | 0.033 | 1.54(0.94–2.54) | 0.090 | ||
| Chemotherapy | 0.288 | ||||||||||
| None | 26/55 | 11/28 | 42.3/50.9 | 15/27 | 57.7/49.1 | 1.73(0.79–3.79) | 0.172 | 2.42(0.80–7.37) | 0.119 | ||
| Yes | 180/521 | 93/304 | 51.7/58.3 | 87/217 | 48.3/41.7 | 1.72(1.28–2.31) | <0.001 | 1.66(1.23–2.25) | 0.001 | ||
| Targeted therapy | 0.407 | ||||||||||
| None | 174/480 | 85/273 | 48.9/56.9 | 89/207 | 51.5/43.1 | 1.77(1.32–2.39) | <0.001 | 1.71(1.26–2.32) | 0.001 | ||
| Yes | 32/96 | 19/59 | 59.4/61.5 | 13/37 | 40.6/38.5 | 1.55(0.76–3.16) | 0.230 | 1.47(0.63–3.43) | 0.375 | ||
Adjusted for age, sex, smoking status, diabetes mellitus, histology, clinical stage, surgical operation and treatment status.
P value for heterogeneity.
Other carcinomas include large cell, undifferentiated and mixed-cell carcinomas.
Genotypes of rs895819 polymorphism and the association with platinum-based chemotherapy response and OS in patients with advanced NSCLC.
| Genotype | Response | OS | |||||||||
| PatientsN (%) | RespondersN (%) | Crude OR(95% CI) |
| Adjusted OR(95% CI) |
| DeathsN (%) | MST(Months) | Adjusted HR(95% CI) |
| ||
| Rs895819 | |||||||||||
| AA | 168(56.8) | 68(40.5) | 1.00 | 1.00 | 60(35.7) | 43.0 | 1.00 | ||||
| AG | 103(34.8) | 30(29.1) | 0.60(0.39–1.02) | 0.060 | 0.65(0.37–1.12) | 0.120 | 50(48.5) | 21.0 | 1.71(1.15–2.53) | 0.007 | |
| GG | 25(8.4) | 3(12.0) | 0.20(0.06–0.70) | 0.011 | 0.19(0.05–0.68) | 0.010 | 12(48.0) | 15.0 | 1.20(0.63–2.29) | 0.584 | |
| Allelic trend | 0.53(0.35–0.80) | 0.003 | 0.54(0.35–0.83) | 0.005 | 1.26(0.97–1.63) | 0.090 | |||||
| AA | 168(56.8) | 68(40.5) | 1.00 | 1.00 | 60(35.7) | 43.0 | 1.00 | ||||
| AG/GG | 128(43.2) | 33(25.8) | 0.51(0.31–0.84) | 0.009 | 0.54(0.32–0.91) | 0.020 | 62(48.4) | 21.0 | 1.59(1.09–2.31) | 0.016 | |
Adjusted for age, sex, smoking status, diabetes mellitus, histology, clinical stage, surgical operation and treatment status.