Literature DB >> 24212861

Distribution and organization of a tandemly repeated 352-bp sequence in the oryzae family.

A De Kochko1, M C Kiefer, F Cordesse, A S Reddy, M Delseny.   

Abstract

A 352-bp EcoRI fragment from rice DNA was cloned and shown to be a member of a tandem repeat. Sequence determination revealed homologies with human alpha satellite DNA and maize knob heterochromatin specific repeat. This 352-bp sequence is highly specific for the AA genome of rice. However, copy number and sequence organization are variable, depending on the accession analyzed. Several examples of amplification were observed in O. rufipogon and O. longistaminata. Use of resolutive polyacrylamide gel electrophoresis and 4-bp cutter enzymes allowed one to distinguish between the Indica and Japonica subtypes of O. sativa. The same method also discriminates between two groups of O. rufipogon, the presumed ancestor of O. sativa, suggesting that the present day Indica and Japonica subtypes originated independently from two O. rufipogon distinct populations.

Entities:  

Year:  1991        PMID： 24212861     DOI： 10.1007/BF00231278

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  20 in total

1.  Structural and transcriptional characterization of the external spacer of a ribosomal RNA nuclear gene from a higher plant.

Authors:  D Delcasso-Tremousaygue; F Grellet; F Panabieres; E D Ananiev; M Delseny
Journal:  Eur J Biochem       Date:  1988-03-15

2.  Evolutionary relationships in the Sativa group of Oryza based on isozyme data.

Authors:  G Second
Journal:  Genet Sel Evol       Date:  1985       Impact factor: 4.297

3.  Variable copy number DNA sequences in rice.

Authors:  S Kikuchi; F Takaiwa; K Oono
Journal:  Mol Gen Genet       Date:  1987-12

4.  A new rice repetitive DNA shows sequence homology to both 5S RNA and tRNA.

Authors:  T Y Wu; R Wu
Journal:  Nucleic Acids Res       Date:  1987-08-11       Impact factor: 16.971

5.  Experimental studies on the origin of cultivated rice.

Authors:  H Oka
Journal:  Genetics       Date:  1974-09       Impact factor: 4.562

6.  Interrelationship of cultivated rices Oryza sativa and O. glaberrima with wild O. perennis complex : Analysis of fraction 1 protein and some repeated DNA sequences.

Authors:  D Pental; S R Barnes
Journal:  Theor Appl Genet       Date:  1985-05       Impact factor: 5.699

7.  Molecular mapping of rice chromosomes.

Authors:  S R McCouch; G Kochert; Z H Yu; Z Y Wang; G S Khush; W R Coffman; S D Tanksley
Journal:  Theor Appl Genet       Date:  1988-12       Impact factor: 5.699

8.  Ribosomal gene spacer length variability in cultivated and wild rice species.

Authors:  F Cordesse; G Second; M Delseny
Journal:  Theor Appl Genet       Date:  1990-01       Impact factor: 5.699

9.  Genome-specific repetitive sequences in the genus Oryza.

Authors:  X Zhao; T Wu; Y Xie; R Wu
Journal:  Theor Appl Genet       Date:  1989-08       Impact factor: 5.699

10.  Nuclear DNA amplification in cultured cells of Oryza sativa L.

Authors:  K L Zheng; S Castiglione; M G Biasini; A Biroli; C Morandi; F Sala
Journal:  Theor Appl Genet       Date:  1987-05       Impact factor: 5.699
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  11 in total

1.  Characterization of a family of tandemly repeated DNA sequences in Triticeae.

Authors:  A Vershinin; S Svitashev; P O Gummesson; B Salomon; R von Bothmer; T Bryngelsson
Journal:  Theor Appl Genet       Date:  1994-10       Impact factor: 5.699

2.  Detection of section-specific random amplified polymorphic DNA (RAPD) markers in Lilium.

Authors:  M Yamagishi
Journal:  Theor Appl Genet       Date:  1995-11       Impact factor: 5.699

3.  DNA fingerprinting in rice using oligonucleotide probes specific for simple repetitive DNA sequences.

Authors:  W Ramakishana; M D Lagu; V S Gupta; P K Ranjekar
Journal:  Theor Appl Genet       Date:  1994-06       Impact factor: 5.699

4.  Genome specificity of rDNA spacer fragments from Oryza sativa L.

Authors:  F Cordesse; F Grellet; A S Reddy; M Delseny
Journal:  Theor Appl Genet       Date:  1992-04       Impact factor: 5.699

5.  Characterization of a highly repeated DNA component of perennial oats (Helictotrichon, Poaceae) with sequence similarity to a A-genome-specific satellite DNA of rice (Oryza).

Authors:  B Grebenstein; O Grebenstein; W Sauer; V Hemleben
Journal:  Theor Appl Genet       Date:  1995-06       Impact factor: 5.699

6.  Visual verification of close disposition between a rice A genome-specific DNA sequence (TrsA) and the telomere sequence.

Authors:  N Ohmido; K Fukui
Journal:  Plant Mol Biol       Date:  1997-12       Impact factor: 4.076

7.  Differential homogenization and amplification of two satellite DNAs in the genus Cucurbita (Cucurbitaceae).

Authors:  K King; J Jobst; V Hemleben
Journal:  J Mol Evol       Date:  1995-12       Impact factor: 2.395

8.  PFGE analysis of the rice genome: estimation of fragment sizes, organization of repetitive sequences and relationships between genetic and physical distances.

Authors:  K S Wu; S D Tanksley
Journal:  Plant Mol Biol       Date:  1993-10       Impact factor: 4.076

9.  Involvement of transposition in dispersion of tandem repeat sequences (TrsA) in rice genomes.

Authors:  H Ohtsubo; E Ohtsubo
Journal:  Mol Gen Genet       Date:  1994-11-15

10.  Enigmatic double-stranded RNA in Japonica rice.

Authors:  T Fukuhara; H Moriyama; J Y Pak; H Hyakutake; T Nitta
Journal:  Plant Mol Biol       Date:  1993-03       Impact factor: 4.076
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