Literature DB >> 8587146

Differential homogenization and amplification of two satellite DNAs in the genus Cucurbita (Cucurbitaceae).

K King1, J Jobst, V Hemleben.   

Abstract

Two different satellite DNAs exist in the genus Cucurbita which are different with respect to repeat length (350 bp and 170 bp), array size, and sequence homogenization. Whereas the 350-bp satellite DNA is prominent and very homogeneous in all species investigated except for C. maxima and C. lundelliana, the 170-bp satellite is rather evenly distributed in all species. In C. maxima and C. lundelliana the 350-bp satellite is present only in small amounts, but detectable by the sensitive PCR method. These repeats are also very homogeneous, reflecting a silent stage of satellite DNA. In contrast, the 170-bp satellite DNA is intra- and interspecifically heterogeneous. It is striking that the species with no detectable amount of 350-bp satellite contain 170-bp satellite DNA clusters with the highest degree of homogeneity. The evolution of satellite DNA repeats within cultivated and wild species in the genus Cucurbita is elucidated using the sequence data of both satellite DNAs from all species investigated. The value of satellite DNA for phylogenetic analysis between closely related species is discussed.

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Year:  1995        PMID: 8587146     DOI: 10.1007/bf00173181

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  29 in total

1.  Equilibrium sedimentation in density gradients of DNA preparations from animal tissues.

Authors:  S KIT
Journal:  J Mol Biol       Date:  1961-12       Impact factor: 5.469

2.  Cloning and characterization of a Beta vulgaris satellite DNA family.

Authors:  T Schmidt; M Metzlaff
Journal:  Gene       Date:  1991-05-30       Impact factor: 3.688

3.  SQUASH AND GOURD BEES (PEPONAPIS, XENOGLOSSA) AND THE ORIGIN OF THE CULTIVATED CUCURBITA.

Authors:  Paul D Hurd; E Gorton Linsley; Thomas W Whitaker
Journal:  Evolution       Date:  1971-03       Impact factor: 3.694

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

5.  Optimal alignments in linear space.

Authors:  E W Myers; W Miller
Journal:  Comput Appl Biosci       Date:  1988-03

6.  Possible role of natural selection in the formation of tandem-repetitive noncoding DNA.

Authors:  W Stephan; S Cho
Journal:  Genetics       Date:  1994-01       Impact factor: 4.562

7.  Molecular drive: a cohesive mode of species evolution.

Authors:  G Dover
Journal:  Nature       Date:  1982-09-09       Impact factor: 49.962

8.  Variability and evolution of highly repeated DNA sequences in the genus Beta.

Authors:  T Schmidt; J S Heslop-Harrison
Journal:  Genome       Date:  1993-12       Impact factor: 2.166

9.  Genome-specific repetitive sequences in the genus Oryza.

Authors:  X Zhao; T Wu; Y Xie; R Wu
Journal:  Theor Appl Genet       Date:  1989-08       Impact factor: 5.699

10.  Tandem-repetitive noncoding DNA: forms and forces.

Authors:  W Stephan
Journal:  Mol Biol Evol       Date:  1989-03       Impact factor: 16.240

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  15 in total

1.  Microarray-based survey of repetitive genomic sequences in Vicia spp.

Authors:  M Nouzová; P Neumann; A Navrátilová; D W Galbraith; J Macas
Journal:  Plant Mol Biol       Date:  2001-01       Impact factor: 4.076

Review 2.  Variation in satellite DNA profiles--causes and effects.

Authors:  Durdica Ugarković; Miroslav Plohl
Journal:  EMBO J       Date:  2002-11-15       Impact factor: 11.598

3.  Distribution of novel and known repeated elements of Solanum and application for the identification of somatic hybrids among Solanum species.

Authors:  M Stadler; T Stelzer; N Borisjuk; C Zanke; L Schilde-Rentschler; V Hemleben
Journal:  Theor Appl Genet       Date:  1995-12       Impact factor: 5.699

4.  Sequence homogenization and chromosomal localization of VicTR-B satellites differ between closely related Vicia species.

Authors:  Jirí Macas; Alice Navrátilová; Andrea Koblízková
Journal:  Chromosoma       Date:  2006-06-20       Impact factor: 4.316

5.  Phylogenetic relationships among domesticated and wild species of Cucurbita (Cucurbitaceae) inferred from a mitochondrial gene: Implications for crop plant evolution and areas of origin.

Authors:  Oris I Sanjur; Dolores R Piperno; Thomas C Andres; Linda Wessel-Beaver
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-08       Impact factor: 11.205

6.  Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome.

Authors:  Mariela Sader; Magdalena Vaio; Luiz Augusto Cauz-Santos; Marcelo Carnier Dornelas; Maria Lucia Carneiro Vieira; Natoniel Melo; Andrea Pedrosa-Harand
Journal:  Planta       Date:  2021-04-01       Impact factor: 4.116

7.  Study and Physical Mapping of the Species-Specific Tandem Repeat CS-237 Linked with 45S Ribosomal DNA Intergenic Spacer in Cannabis sativa L.

Authors:  Oleg S Alexandrov; Dmitry V Romanov; Mikhail G Divashuk; Olga V Razumova; Daniil S Ulyanov; Gennady I Karlov
Journal:  Plants (Basel)       Date:  2022-05-24

8.  Molecular and chromosomal evidence for allopolyploidy in soybean.

Authors:  Navdeep Gill; Seth Findley; Jason G Walling; Christian Hans; Jianxin Ma; Jeff Doyle; Gary Stacey; Scott A Jackson
Journal:  Plant Physiol       Date:  2009-07-15       Impact factor: 8.340

9.  Dynamic changes in the distribution of a satellite homologous to intergenic 26-18S rDNA spacer in the evolution of Nicotiana.

Authors:  K Y Lim; K Skalicka; B Koukalova; R A Volkov; R Matyasek; V Hemleben; A R Leitch; A Kovarik
Journal:  Genetics       Date:  2004-04       Impact factor: 4.562

10.  Molecular analysis and genomic organization of major DNA satellites in banana (Musa spp.).

Authors:  Jana Čížková; Eva Hřibová; Lenka Humplíková; Pavla Christelová; Pavla Suchánková; Jaroslav Doležel
Journal:  PLoS One       Date:  2013-01-23       Impact factor: 3.240

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