Literature DB >> 20629059

Directed evolution of DNA polymerases for next-generation sequencing.

Aaron M Leconte1, Maha P Patel, Lauryn E Sass, Peter McInerney, Mirna Jarosz, Li Kung, Jayson L Bowers, Philip R Buzby, J William Efcavitch, Floyd E Romesberg.   

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Year:  2010        PMID： 20629059      PMCID： PMC3043640          DOI： 10.1002/anie.201001607

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  26 in total

1.  Directed evolution of polymerase function by compartmentalized self-replication.

Authors:  F J Ghadessy; J L Ong; P Holliger
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

2.  Synthetic shuffling expands functional protein diversity by allowing amino acids to recombine independently.

Authors:  Jon E Ness; Seran Kim; Andrea Gottman; Rob Pak; Anke Krebber; Torben V Borchert; Sridhar Govindarajan; Emily C Mundorff; Jeremy Minshull
Journal:  Nat Biotechnol       Date:  2002-11-11       Impact factor: 54.908

3.  Sequence information can be obtained from single DNA molecules.

Authors:  Ido Braslavsky; Benedict Hebert; Emil Kartalov; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-21       Impact factor: 11.205

4.  Use of Pol I-deficient E. coli for functional complementation of DNA polymerase.

Authors:  Manel Camps; Lawrence A Loeb
Journal:  Methods Mol Biol       Date:  2003

5.  Fluorescent in situ sequencing on polymerase colonies.

Authors:  Robi D Mitra; Jay Shendure; Jerzy Olejnik; George M Church
Journal:  Anal Biochem       Date:  2003-09-01       Impact factor: 3.365

6.  Thermodynamics of the binding of Thermus aquaticus DNA polymerase to primed-template DNA.

Authors:  Kausiki Datta; Vince J LiCata
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

7.  Engineered protein function by selective amino acid diversification.

Authors:  Jeremy Minshull; Sridhar Govindarajan; Tony Cox; Jon E Ness; Claes Gustafsson
Journal:  Methods       Date:  2004-04       Impact factor: 3.608

8.  Reconstructed evolutionary adaptive paths give polymerases accepting reversible terminators for sequencing and SNP detection.

Authors:  Fei Chen; Eric A Gaucher; Nicole A Leal; Daniel Hutter; Stephanie A Havemann; Sridhar Govindarajan; Eric A Ortlund; Steven A Benner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-11       Impact factor: 11.205

9.  Expanding the substrate repertoire of a DNA polymerase by directed evolution.

Authors:  Ming Fa; Annalisa Radeghieri; Allison A Henry; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2004-02-18       Impact factor: 15.419

10.  Discovery and directed evolution of a glyphosate tolerance gene.

Authors:  Linda A Castle; Daniel L Siehl; Rebecca Gorton; Phillip A Patten; Yong Hong Chen; Sean Bertain; Hyeon-Je Cho; Nicholas Duck; James Wong; Donglong Liu; Michael W Lassner
Journal:  Science       Date:  2004-05-21       Impact factor: 47.728
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  9 in total

1.  Structural basis for the synthesis of nucleobase modified DNA by Thermus aquaticus DNA polymerase.

Authors:  Samra Obeid; Anna Baccaro; Wolfram Welte; Kay Diederichs; Andreas Marx
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-01       Impact factor: 11.205

Review 2.  Directed polymerase evolution.

Authors:  Tingjian Chen; Floyd E Romesberg
Journal:  FEBS Lett       Date:  2013-11-05       Impact factor: 4.124

3.  DNA Polymerase Activity Assay Using Near-infrared Fluorescent Labeled DNA Visualized by Acrylamide Gel Electrophoresis.

Authors:  Eliza L Lewis; Aaron M Leconte
Journal:  J Vis Exp       Date:  2017-10-06       Impact factor: 1.355

Review 4.  Reprogramming cells with synthetic proteins.

Authors:  Xiaoxiao Yang; Vikas Malik; Ralf Jauch
Journal:  Asian J Androl       Date:  2015 May-Jun       Impact factor: 3.285

Review 5.  DNA polymerases engineered by directed evolution to incorporate non-standard nucleotides.

Authors:  Roberto Laos; J Michael Thomson; Steven A Benner
Journal:  Front Microbiol       Date:  2014-10-31       Impact factor: 5.640

6.  Identification of Thermus aquaticus DNA polymerase variants with increased mismatch discrimination and reverse transcriptase activity from a smart enzyme mutant library.

Authors:  Govindan Raghunathan; Andreas Marx
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

7.  "NAD-display": Ultrahigh-Throughput in Vitro Screening of NAD(H) Dehydrogenases Using Bead Display and Flow Cytometry.

Authors:  Laurens Lindenburg; Florian Hollfelder
Journal:  Angew Chem Int Ed Engl       Date:  2021-03-08       Impact factor: 15.336

8.  Deletional protein engineering based on stable fold.

Authors:  Govindan Raghunathan; Nagasundarapandian Soundrarajan; Sriram Sokalingam; Hyungdon Yun; Sun-Gu Lee
Journal:  PLoS One       Date:  2012-12-11       Impact factor: 3.240

9.  Evolution of thermophilic DNA polymerases for the recognition and amplification of C2'-modified DNA.

Authors:  Tingjian Chen; Narupat Hongdilokkul; Zhixia Liu; Ramkrishna Adhikary; Shujian S Tsuen; Floyd E Romesberg
Journal:  Nat Chem       Date:  2016-04-18       Impact factor: 24.427
  9 in total

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