Literature DB >> 31003719

Engineering Polymerases for New Functions.

Timothy A Coulther1, Hannah R Stern1, Penny J Beuning2.   

Abstract

DNA polymerases are critical tools in biotechnology, enabling efficient and accurate amplification of DNA templates, yet many desired functions are not readily available in natural DNA polymerases. New or improved functions can be engineered in DNA polymerases by mutagenesis or through the creation of protein chimeras. Engineering often necessitates the development of new techniques, such as selections in water-in-oil emulsions that connect genotype to phenotype and allow more flexibility in engineering than phage display. Engineering efforts have led to DNA polymerases that can withstand extreme conditions or the presence of inhibitors, as well as polymerases with the ability to copy modified DNA templates. In this review we discuss polymerases for biotechnology that have been reported along with tools to enable further development.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNA damage; DNA modification; DNA polymerase; fidelity; processivity

Year:  2019        PMID: 31003719      PMCID: PMC6745271          DOI: 10.1016/j.tibtech.2019.03.011

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  81 in total

1.  Directed evolution of polymerase function by compartmentalized self-replication.

Authors:  F J Ghadessy; J L Ong; P Holliger
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

2.  Cold-sensitive mutants of Taq DNA polymerase provide a hot start for PCR.

Authors:  Milko B Kermekchiev; Anatoly Tzekov; Wayne M Barnes
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

3.  Helix-hairpin-helix motifs confer salt resistance and processivity on chimeric DNA polymerases.

Authors:  Andrey R Pavlov; Galina I Belova; Sergei A Kozyavkin; Alexei I Slesarev
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-04       Impact factor: 11.205

4.  A population of thermostable reverse transcriptases evolved from Thermus aquaticus DNA polymerase I by phage display.

Authors:  Sophie Vichier-Guerre; Stéphane Ferris; Nicolas Auberger; Karim Mahiddine; Jean-Luc Jestin
Journal:  Angew Chem Int Ed Engl       Date:  2006-09-18       Impact factor: 15.336

5.  Evolving a thermostable DNA polymerase that amplifies from highly damaged templates.

Authors:  Christian Gloeckner; Katharina B M Sauter; Andreas Marx
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

6.  Polymerase evolution: efforts toward expansion of the genetic code.

Authors:  Aaron M Leconte; Liangjing Chen; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2005-09-14       Impact factor: 15.419

7.  Domain exchange: chimeras of Thermus aquaticus DNA polymerase, Escherichia coli DNA polymerase I and Thermotoga neapolitana DNA polymerase.

Authors:  B Villbrandt; H Sobek; B Frey; D Schomburg
Journal:  Protein Eng       Date:  2000-09

8.  Mechanistic insights into replication across from bulky DNA adducts: a mutant polymerase I allows an N-acetyl-2-aminofluorene adduct to be accommodated during DNA synthesis.

Authors:  Samer Lone; Louis J Romano
Journal:  Biochemistry       Date:  2003-04-08       Impact factor: 3.162

9.  Molecular breeding of polymerases for amplification of ancient DNA.

Authors:  Marc d'Abbadie; Michael Hofreiter; Alexandra Vaisman; David Loakes; Didier Gasparutto; Jean Cadet; Roger Woodgate; Svante Pääbo; Philipp Holliger
Journal:  Nat Biotechnol       Date:  2007-07-15       Impact factor: 54.908

10.  Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs.

Authors:  John P McDonald; Ashley Hall; Didier Gasparutto; Jean Cadet; Jack Ballantyne; Roger Woodgate
Journal:  Nucleic Acids Res       Date:  2006-02-18       Impact factor: 16.971

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  5 in total

1.  Building better enzymes: Molecular basis of improved non-natural nucleobase incorporation by an evolved DNA polymerase.

Authors:  Zahra Ouaray; Isha Singh; Millie M Georgiadis; Nigel G J Richards
Journal:  Protein Sci       Date:  2019-11-14       Impact factor: 6.725

2.  Engineered viral DNA polymerase with enhanced DNA amplification capacity: a proof-of-concept of isothermal amplification of damaged DNA.

Authors:  Carlos D Ordóñez; Ana Lechuga; Margarita Salas; Modesto Redrejo-Rodríguez
Journal:  Sci Rep       Date:  2020-09-14       Impact factor: 4.379

Review 3.  Building better polymerases: Engineering the replication of expanded genetic alphabets.

Authors:  Zahra Ouaray; Steven A Benner; Millie M Georgiadis; Nigel G J Richards
Journal:  J Biol Chem       Date:  2020-10-01       Impact factor: 5.157

4.  Characteristics of DNA polymerase I from an extreme thermophile, Thermus scotoductus strain K1.

Authors:  Ani Saghatelyan; Hovik Panosyan; Armen Trchounian; Nils-Kåre Birkeland
Journal:  Microbiologyopen       Date:  2021-01-07       Impact factor: 3.904

5.  Fluorinated oil-surfactant mixtures with the density of water: Artificial cells for synthetic biology.

Authors:  Roberto Laos; Steven Benner
Journal:  PLoS One       Date:  2022-01-20       Impact factor: 3.240

  5 in total

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