Literature DB >> 24209620

A Cul4 E3 ubiquitin ligase regulates histone hand-off during nucleosome assembly.

Junhong Han1, Hui Zhang, Honglian Zhang, Zhiquan Wang, Hui Zhou, Zhiguo Zhang.   

Abstract

Nucleosome assembly following DNA replication and gene transcription is important to maintain genome stability and epigenetic information. Newly synthesized histones H3-H4 first bind histone chaperone Asf1 and are then transferred to other chaperones for nucleosome assembly. However, it is unknown how H3-H4 is transferred from the Asf1-H3-H4 complex to other chaperones because Asf1 binds H3-H4 with high affinity. Here, we show that yeast Rtt101(Mms1) E3 ubiquitin ligase preferentially binds and ubiquitylates new histone H3 acetylated at lysine 56. Inactivation of Rtt101 or mutating H3 lysine residues ubiquitylated by the Rtt101(Mms1) ligase impairs nucleosome assembly and promotes Asf1-H3 interactions. Similar phenotypes occur in human cells in which the ortholog of Rtt101(Mms1), Cul4A(DDB1), is depleted. These results indicate that the transfer of H3-H4 from the Asf1-H3-H4 complex to other histone chaperones is regulated by a conserved E3 ligase and provide evidence for crosstalk between histone acetylation and ubiquitylation in nucleosome assembly.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24209620      PMCID: PMC3994564          DOI: 10.1016/j.cell.2013.10.014

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  53 in total

1.  Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106.

Authors:  Dan Su; Qi Hu; Qing Li; James R Thompson; Gaofeng Cui; Ahmed Fazly; Brian A Davies; Maria Victoria Botuyan; Zhiguo Zhang; Georges Mer
Journal:  Nature       Date:  2012-02-05       Impact factor: 49.962

2.  Histone H3 and H4 ubiquitylation by the CUL4-DDB-ROC1 ubiquitin ligase facilitates cellular response to DNA damage.

Authors:  Hengbin Wang; Ling Zhai; Jun Xu; Heui-Yun Joo; Sarah Jackson; Hediye Erdjument-Bromage; Paul Tempst; Yue Xiong; Yi Zhang
Journal:  Mol Cell       Date:  2006-05-05       Impact factor: 17.970

3.  Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS.

Authors:  Jung-Shin Lee; Abhijit Shukla; Jessica Schneider; Selene K Swanson; Michael P Washburn; Laurence Florens; Sukesh R Bhaumik; Ali Shilatifard
Journal:  Cell       Date:  2007-12-14       Impact factor: 41.582

Review 4.  Crosstalk among Histone Modifications.

Authors:  Tamaki Suganuma; Jerry L Workman
Journal:  Cell       Date:  2008-11-14       Impact factor: 41.582

5.  The sirtuins hst3 and Hst4p preserve genome integrity by controlling histone h3 lysine 56 deacetylation.

Authors:  Ivana Celic; Hiroshi Masumoto; Wendell P Griffith; Pamela Meluh; Robert J Cotter; Jef D Boeke; Alain Verreault
Journal:  Curr Biol       Date:  2006-07-11       Impact factor: 10.834

Review 6.  Chaperoning histones during DNA replication and repair.

Authors:  Monica Ransom; Briana K Dennehey; Jessica K Tyler
Journal:  Cell       Date:  2010-01-22       Impact factor: 41.582

7.  A role for Gcn5 in replication-coupled nucleosome assembly.

Authors:  Rebecca J Burgess; Hui Zhou; Junhong Han; Zhiguo Zhang
Journal:  Mol Cell       Date:  2010-02-26       Impact factor: 17.970

8.  Regulation of DNA replication fork progression through damaged DNA by the Mec1/Rad53 checkpoint.

Authors:  J A Tercero; J F Diffley
Journal:  Nature       Date:  2001-08-02       Impact factor: 49.962

9.  Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast.

Authors:  Zu-Wen Sun; C David Allis
Journal:  Nature       Date:  2002-06-23       Impact factor: 49.962

10.  Yeast CAF-1 assembles histone (H3-H4)2 tetramers prior to DNA deposition.

Authors:  Duane D Winkler; Hui Zhou; Mohd A Dar; Zhiguo Zhang; Karolin Luger
Journal:  Nucleic Acids Res       Date:  2012-08-31       Impact factor: 16.971

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  75 in total

Review 1.  Histone-modifying enzymes, histone modifications and histone chaperones in nucleosome assembly: Lessons learned from Rtt109 histone acetyltransferases.

Authors:  Jayme L Dahlin; Xiaoyue Chen; Michael A Walters; Zhiguo Zhang
Journal:  Crit Rev Biochem Mol Biol       Date:  2014-11-03       Impact factor: 8.250

2.  Intellectual disability-associated dBRWD3 regulates gene expression through inhibition of HIRA/YEM-mediated chromatin deposition of histone H3.3.

Authors:  Wei-Yu Chen; Hsueh-Tzu Shih; Kwei-Yan Liu; Zong-Siou Shih; Li-Kai Chen; Tsung-Han Tsai; Mei-Ju Chen; Hsuan Liu; Bertrand Chin-Ming Tan; Chien-Yu Chen; Hsiu-Hsiang Lee; Benjamin Loppin; Ounissa Aït-Ahmed; June-Tai Wu
Journal:  EMBO Rep       Date:  2015-02-09       Impact factor: 8.807

3.  Rtt101-Mms1-Mms22 coordinates replication-coupled sister chromatid cohesion and nucleosome assembly.

Authors:  Jingjing Zhang; Di Shi; Xiaoli Li; Lin Ding; Jun Tang; Cong Liu; Katsuhiko Shirahige; Qinhong Cao; Huiqiang Lou
Journal:  EMBO Rep       Date:  2017-06-14       Impact factor: 8.807

4.  MPP8 and SIRT1 crosstalk in E-cadherin gene silencing and epithelial-mesenchymal transition.

Authors:  Lidong Sun; Kenji Kokura; Victoria Izumi; John M Koomen; Edward Seto; Jiandong Chen; Jia Fang
Journal:  EMBO Rep       Date:  2015-04-13       Impact factor: 8.807

Review 5.  Quantitative proteomic analysis of histone modifications.

Authors:  He Huang; Shu Lin; Benjamin A Garcia; Yingming Zhao
Journal:  Chem Rev       Date:  2015-02-17       Impact factor: 60.622

6.  CENP-A K124 Ubiquitylation Is Required for CENP-A Deposition at the Centromere.

Authors:  Yohei Niikura; Risa Kitagawa; Hiroo Ogi; Rashid Abdulle; Vishwajeeth Pagala; Katsumi Kitagawa
Journal:  Dev Cell       Date:  2015-02-26       Impact factor: 12.270

7.  Replisome function during replicative stress is modulated by histone h3 lysine 56 acetylation through Ctf4.

Authors:  Pierre Luciano; Pierre-Marie Dehé; Stéphane Audebert; Vincent Géli; Yves Corda
Journal:  Genetics       Date:  2015-02-18       Impact factor: 4.562

8.  H3K14 ubiquitylation promotes H3K9 methylation for heterochromatin assembly.

Authors:  Eriko Oya; Reiko Nakagawa; Yuriko Yoshimura; Mayo Tanaka; Gohei Nishibuchi; Shinichi Machida; Atsuko Shirai; Karl Ekwall; Hitoshi Kurumizaka; Hideaki Tagami; Jun-Ichi Nakayama
Journal:  EMBO Rep       Date:  2019-08-29       Impact factor: 8.807

Review 9.  Recognition of ubiquitinated nucleosomes.

Authors:  Michael T Morgan; Cynthia Wolberger
Journal:  Curr Opin Struct Biol       Date:  2016-12-04       Impact factor: 6.809

10.  Human DNA Ligase I Interacts with and Is Targeted for Degradation by the DCAF7 Specificity Factor of the Cul4-DDB1 Ubiquitin Ligase Complex.

Authors:  Zhimin Peng; Zhongping Liao; Yoshihiro Matsumoto; Austin Yang; Alan E Tomkinson
Journal:  J Biol Chem       Date:  2016-08-29       Impact factor: 5.157

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