Literature DB >> 24203863

20 years since the introduction of DNA barcoding: from theory to application.

Živa Fišer Pečnikar1, Elena V Buzan.   

Abstract

Traditionally, taxonomic identification has relied upon morphological characters. In the last two decades, molecular tools based on DNA sequences of short standardised gene fragments, termed DNA barcodes, have been developed for species discrimination. The most common DNA barcode used in animals is a fragment of the cytochrome c oxidase (COI) mitochondrial gene, while for plants, two chloroplast gene fragments from the RuBisCo large subunit (rbcL) and maturase K (matK) genes are widely used. Information gathered from DNA barcodes can be used beyond taxonomic studies and will have far-reaching implications across many fields of biology, including ecology (rapid biodiversity assessment and food chain analysis), conservation biology (monitoring of protected species), biosecurity (early identification of invasive pest species), medicine (identification of medically important pathogens and their vectors) and pharmacology (identification of active compounds). However, it is important that the limitations of DNA barcoding are understood and techniques continually adapted and improved as this young science matures.

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Year:  2013        PMID: 24203863     DOI: 10.1007/s13353-013-0180-y

Source DB:  PubMed          Journal:  J Appl Genet        ISSN: 1234-1983            Impact factor:   3.240


  66 in total

Review 1.  DNA barcoding of parasites and invertebrate disease vectors: what you don't know can hurt you.

Authors:  Nora J Besansky; David W Severson; Michael T Ferdig
Journal:  Trends Parasitol       Date:  2003-12

2.  Automated species identification: why not?

Authors:  Kevin J Gaston; Mark A O'Neill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-04-29       Impact factor: 6.237

3.  Identifying Canadian mosquito species through DNA barcodes.

Authors:  A Cywinska; F F Hunter; P D N Hebert
Journal:  Med Vet Entomol       Date:  2006-12       Impact factor: 2.739

Review 4.  DNA barcoding in animal species: progress, potential and pitfalls.

Authors:  John Waugh
Journal:  Bioessays       Date:  2007-02       Impact factor: 4.345

5.  Utility of mitochondrial DNA barcodes in species conservation.

Authors:  Daniel Rubinoff
Journal:  Conserv Biol       Date:  2006-08       Impact factor: 6.560

6.  Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified.

Authors:  Hojun Song; Jennifer E Buhay; Michael F Whiting; Keith A Crandall
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-29       Impact factor: 11.205

7.  Evaluation of candidate DNA barcoding loci for economically important timber species of the mahogany family (Meliaceae).

Authors:  A N Muellner; H Schaefer; R Lahaye
Journal:  Mol Ecol Resour       Date:  2011-02-06       Impact factor: 7.090

8.  An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database).

Authors:  Shao-Ke Lou; Ka-Lok Wong; Ming Li; Paul Pui-Hay But; Stephen Kwok-Wing Tsui; Pang-Chui Shaw
Journal:  BMC Genomics       Date:  2010-06-24       Impact factor: 3.969

9.  Lutzomyia sand fly diversity and rates of infection by Wolbachia and an exotic Leishmania species on Barro Colorado Island, Panama.

Authors:  Jorge Azpurua; Dianne De La Cruz; Anayansi Valderama; Donald Windsor
Journal:  PLoS Negl Trop Dis       Date:  2010-03-09

10.  DISTRIBUTION, MORPHOLOGY, AND PHYLOGENY OF KLEBSORMIDIUM (KLEBSORMIDIALES, CHAROPHYCEAE) IN URBAN ENVIRONMENTS IN EUROPE(1).

Authors:  Fabio Rindi; Michael D Guiry; Juan M López-Bautista
Journal:  J Phycol       Date:  2008-11-10       Impact factor: 2.923

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  25 in total

1.  Discriminatory power of rbcL barcode locus for authentication of some of United Arab Emirates (UAE) native plants.

Authors:  Lina Maloukh; Alagappan Kumarappan; Mohammad Jarrar; Jawad Salehi; Houssam El-Wakil; T V Rajya Lakshmi
Journal:  3 Biotech       Date:  2017-06-08       Impact factor: 2.406

2.  Molecular authentication of Tetrastigma hemsleyanum from its adulterant species using ISSR, CAPS, and ITS2 barcode.

Authors:  Xin Peng; Xiurong Wu; Qingyong Ji; Ruikang Yang; Yulan Li
Journal:  Mol Biol Rep       Date:  2016-05-31       Impact factor: 2.316

Review 3.  The changing epitome of species identification - DNA barcoding.

Authors:  M Ajmal Ali; Gábor Gyulai; Norbert Hidvégi; Balázs Kerti; Fahad M A Al Hemaid; Arun K Pandey; Joongku Lee
Journal:  Saudi J Biol Sci       Date:  2014-03-31       Impact factor: 4.219

4.  ITS2: An Ideal DNA Barcode for the Arid Medicinal Plant Rhazya Stricta.

Authors:  Samia A Khan; Mohamed N Baeshen; Hassan A Ramadan; Nabih A Baeshen
Journal:  Pharmaceut Med       Date:  2019-02

Review 5.  Application of DNA barcoding for ensuring food safety and quality.

Authors:  Jirapat Dawan; Juhee Ahn
Journal:  Food Sci Biotechnol       Date:  2022-07-27       Impact factor: 3.231

6.  A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains.

Authors:  Mark D Preston; Susana Campino; Samuel A Assefa; Diego F Echeverry; Harold Ocholla; Alfred Amambua-Ngwa; Lindsay B Stewart; David J Conway; Steffen Borrmann; Pascal Michon; Issaka Zongo; Jean-Bosco Ouédraogo; Abdoulaye A Djimde; Ogobara K Doumbo; Francois Nosten; Arnab Pain; Teun Bousema; Chris J Drakeley; Rick M Fairhurst; Colin J Sutherland; Cally Roper; Taane G Clark
Journal:  Nat Commun       Date:  2014-06-13       Impact factor: 14.919

7.  Promise and Challenge of DNA Barcoding in Venus Slipper (Paphiopedilum).

Authors:  Yan-Yan Guo; Lai-Qiang Huang; Zhong-Jian Liu; Xiao-Quan Wang
Journal:  PLoS One       Date:  2016-01-11       Impact factor: 3.240

8.  Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae.

Authors:  Ga Hun Boo; Jeffery R Hughey; Kathy Ann Miller; Sung Min Boo
Journal:  Sci Rep       Date:  2016-10-14       Impact factor: 4.379

9.  Comparative sequence analysis of Cyclospora cayetanensis apicoplast genomes originating from diverse geographical regions.

Authors:  Hediye Nese Cinar; Yvonne Qvarnstrom; Yuping Wei-Pridgeon; Wen Li; Fernanda S Nascimento; Michael J Arrowood; Helen R Murphy; AhYoung Jang; Eunje Kim; RaeYoung Kim; Alexandre da Silva; Gopal R Gopinath
Journal:  Parasit Vectors       Date:  2016-11-29       Impact factor: 3.876

10.  Using DNA Barcodes to Identify Road-Killed Animals in Two Atlantic Forest Nature Reserves, Brazil.

Authors:  Angélica H Klippel; Pablo V Oliveira; Karollini B Britto; Bárbara F Freire; Marcel R Moreno; Alexandre R Dos Santos; Aureo Banhos; Greiciane G Paneto
Journal:  PLoS One       Date:  2015-08-05       Impact factor: 3.240

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